RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 DCAF8L2P0C7V8 631 aa19.66■□□□□ 0.74
VCL-202ENST00000372755 SUPT5HO00267 1087 aaKnown RBP18.62■□□□□ 0.57
VCL-202ENST00000372755 PELP1Q8IZL8 1130 aaKnown RBP18.53■□□□□ 0.56
VCL-202ENST00000372755 APLP2Q06481 763 aa18.14■□□□□ 0.49
VCL-202ENST00000372755 EHMT2Q96KQ7 1210 aa18.14■□□□□ 0.49
VCL-202ENST00000372755 SHROOM4Q9ULL8 1493 aa18.11■□□□□ 0.49
VCL-202ENST00000372755 NISCHQ9Y2I1 1504 aa17.98■□□□□ 0.47
VCL-202ENST00000372755 FAM9AQ8IZU1 332 aaPredicted RBP17.97■□□□□ 0.47
VCL-202ENST00000372755 ERICH6Q7L0X2 663 aa17.72■□□□□ 0.43
VCL-202ENST00000372755 CCER1Q8TC90 406 aaPredicted RBP17.7■□□□□ 0.42
VCL-202ENST00000372755 CENPBP07199 599 aaPredicted RBP17.6■□□□□ 0.41
VCL-202ENST00000372755 TTBK1Q5TCY1 1321 aaPredicted RBP17.57■□□□□ 0.4
VCL-202ENST00000372755 PCGF6Q9BYE7 350 aa17.52■□□□□ 0.4
VCL-202ENST00000372755 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
VCL-202ENST00000372755 RANGAP1P46060 587 aaPredicted RBP17.38■□□□□ 0.37
VCL-202ENST00000372755 ATP1B4Q9UN42 357 aaPredicted RBP17.36■□□□□ 0.37
VCL-202ENST00000372755 NEFLP07196 543 aa17.33■□□□□ 0.36
VCL-202ENST00000372755 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
VCL-202ENST00000372755 UBTFP17480 764 aaKnown RBP17.19■□□□□ 0.34
VCL-202ENST00000372755 MYT1Q01538 1121 aa17.16■□□□□ 0.34
VCL-202ENST00000372755 YTHDC1Q96MU7 727 aaKnown RBP17.06■□□□□ 0.32
VCL-202ENST00000372755 DAXXQ9UER7 740 aaPredicted RBP16.96■□□□□ 0.3
VCL-202ENST00000372755 MYT1LQ9UL68 1186 aa16.82■□□□□ 0.28
VCL-202ENST00000372755 POLR3GLQ9BT43 218 aa16.76■□□□□ 0.27
VCL-202ENST00000372755 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
VCL-202ENST00000372755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.74■□□□□ 0.27
VCL-202ENST00000372755 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
VCL-202ENST00000372755 PPARGC1BQ86YN6 1023 aaKnown RBP16.74■□□□□ 0.27
VCL-202ENST00000372755 ITGAEP38570 1179 aa16.67■□□□□ 0.26
VCL-202ENST00000372755 HRCP23327 699 aa16.57■□□□□ 0.24
VCL-202ENST00000372755 ZNF316A6NFI3 1004 aaPredicted RBP16.52■□□□□ 0.24
VCL-202ENST00000372755 SLC4A1APQ9BWU0 796 aaKnown RBP16.52■□□□□ 0.23
VCL-202ENST00000372755 CNGB1Q14028 1251 aaPredicted RBP16.5■□□□□ 0.23
VCL-202ENST00000372755 RTL5Q5HYW3 569 aaPredicted RBP16.5■□□□□ 0.23
VCL-202ENST00000372755 CLSPNQ9HAW4 1339 aa16.48■□□□□ 0.23
VCL-202ENST00000372755 CHIC1Q5VXU3 224 aa16.44■□□□□ 0.22
VCL-202ENST00000372755 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
VCL-202ENST00000372755 DIEXFQ68CQ4 756 aaKnown RBP16.26■□□□□ 0.19
VCL-202ENST00000372755 FAM50AQ14320 339 aaKnown RBP16.25■□□□□ 0.19
VCL-202ENST00000372755 TRIM52Q96A61 297 aa16.25■□□□□ 0.19
VCL-202ENST00000372755 ZBTB47Q9UFB7 747 aaPredicted RBP16.24■□□□□ 0.19
VCL-202ENST00000372755 NEUROD1Q13562 356 aa16.12■□□□□ 0.17
VCL-202ENST00000372755 ANP32CO43423 234 aa16.11■□□□□ 0.17
VCL-202ENST00000372755 CDK11AQ9UQ88 783 aaPredicted RBP16.1■□□□□ 0.17
VCL-202ENST00000372755 ZNF326Q5BKZ1 582 aaKnown RBP16.06■□□□□ 0.16
VCL-202ENST00000372755 CANXP27824 592 aaKnown RBP16.05■□□□□ 0.16
VCL-202ENST00000372755 NEFMP07197 916 aa16.03■□□□□ 0.16
VCL-202ENST00000372755 BCANQ96GW7 911 aa16.03■□□□□ 0.16
VCL-202ENST00000372755 SLC24A1O60721 1099 aa15.99■□□□□ 0.15
VCL-202ENST00000372755 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
VCL-202ENST00000372755 BCL11AQ9H165 835 aa15.89■□□□□ 0.13
VCL-202ENST00000372755 ANP32AP39687 249 aaKnown RBP15.87■□□□□ 0.13
VCL-202ENST00000372755 FBLN2P98095 1184 aa15.87■□□□□ 0.13
VCL-202ENST00000372755 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
VCL-202ENST00000372755 ANP32BQ92688 251 aaKnown RBP15.78■□□□□ 0.12
VCL-202ENST00000372755 NPM2Q86SE8 214 aaKnown RBP15.71■□□□□ 0.11
VCL-202ENST00000372755 ESF1Q9H501 851 aaKnown RBP15.71■□□□□ 0.1
VCL-202ENST00000372755 HSP90AA1P07900 732 aaKnown RBP15.7■□□□□ 0.1
VCL-202ENST00000372755 ZNF777Q9ULD5 760 aaPredicted RBP15.69■□□□□ 0.1
VCL-202ENST00000372755 UPF2Q9HAU5 1272 aaKnown RBP15.68■□□□□ 0.1
VCL-202ENST00000372755 ABCC9O60706 1549 aa15.67■□□□□ 0.1
VCL-202ENST00000372755 P3H3Q8IVL6 736 aa15.66■□□□□ 0.1
VCL-202ENST00000372755 ARID3CA6NKF2 412 aa15.66■□□□□ 0.1
VCL-202ENST00000372755 ACIN1Q9UKV3 1341 aaKnown RBP15.65■□□□□ 0.1
VCL-202ENST00000372755 STAG3Q9UJ98 1225 aa15.62■□□□□ 0.09
VCL-202ENST00000372755 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
VCL-202ENST00000372755 TONSLQ96HA7 1378 aa15.59■□□□□ 0.09
VCL-202ENST00000372755 CHGAP10645 457 aaKnown RBP15.57■□□□□ 0.08
VCL-202ENST00000372755 EIF5BO60841 1220 aaKnown RBP15.55■□□□□ 0.08
VCL-202ENST00000372755 FKBP8Q14318 412 aa15.55■□□□□ 0.08
VCL-202ENST00000372755 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.53■□□□□ 0.08
VCL-202ENST00000372755 HNRNPUQ00839 825 aaKnown RBP eCLIP15.51■□□□□ 0.07
VCL-202ENST00000372755 GLIPR1L2Q4G1C9 344 aa15.51■□□□□ 0.07
VCL-202ENST00000372755 NPM1P06748 294 aaKnown RBP eCLIP15.49■□□□□ 0.07
VCL-202ENST00000372755 FAM9BQ8IZU0 186 aa15.48■□□□□ 0.07
VCL-202ENST00000372755 WDR43Q15061 677 aaKnown RBP eCLIP15.45■□□□□ 0.06
VCL-202ENST00000372755 TMC1Q8TDI8 760 aa15.44■□□□□ 0.06
VCL-202ENST00000372755 CCDC136Q96JN2 1154 aa15.44■□□□□ 0.06
VCL-202ENST00000372755 CDK11BP21127 795 aaKnown RBP15.4■□□□□ 0.06
VCL-202ENST00000372755 DDX10Q13206 875 aaKnown RBP15.4■□□□□ 0.06
VCL-202ENST00000372755 PLPPR3Q6T4P5 718 aa15.4■□□□□ 0.06
VCL-202ENST00000372755 SALL2Q9Y467 1007 aaPredicted RBP15.4■□□□□ 0.06
VCL-202ENST00000372755 MYH16Q9H6N6 1097 aa15.39■□□□□ 0.05
VCL-202ENST00000372755 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.36■□□□□ 0.05
VCL-202ENST00000372755 TSPY4P0CV99 314 aa15.32■□□□□ 0.04
VCL-202ENST00000372755 TSPY10P0CW01 314 aa15.32■□□□□ 0.04
VCL-202ENST00000372755 MRS2Q9HD23 443 aa15.32■□□□□ 0.04
VCL-202ENST00000372755 NBR1Q14596 966 aa15.3■□□□□ 0.04
VCL-202ENST00000372755 CHIC2Q9UKJ5 165 aa15.3■□□□□ 0.04
VCL-202ENST00000372755 SCAF1Q9H7N4 1312 aaKnown RBP15.29■□□□□ 0.04
VCL-202ENST00000372755 ARXQ96QS3 562 aa15.28■□□□□ 0.04
VCL-202ENST00000372755 NCLP19338 710 aaKnown RBP15.28■□□□□ 0.04
VCL-202ENST00000372755 KDM2AQ9Y2K7 1162 aa15.26■□□□□ 0.03
VCL-202ENST00000372755 BECN1Q14457 450 aa15.26■□□□□ 0.03
VCL-202ENST00000372755 DDRGK1Q96HY6 314 aa15.25■□□□□ 0.03
VCL-202ENST00000372755 ANP32EQ9BTT0 268 aa15.24■□□□□ 0.03
VCL-202ENST00000372755 A0A0G2JS52 829 aa15.22■□□□□ 0.03
VCL-202ENST00000372755 GOLGA6L22H0YM25 854 aa15.21■□□□□ 0.03
VCL-202ENST00000372755 MTUS2Q5JR59 1369 aa15.21■□□□□ 0.03
VCL-202ENST00000372755 DCAF1Q9Y4B6 1507 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms