RNA–Protein interactions for RNA: ENST00000272793.9

UBR3-201, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UBR3, Length 8,005 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-201ENST00000272793 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
UBR3-201ENST00000272793 DCAF8L2P0C7V8 631 aa25.71■■□□□ 1.71
UBR3-201ENST00000272793 ERICH6Q7L0X2 663 aa25.61■■□□□ 1.69
UBR3-201ENST00000272793 MYT1Q01538 1121 aa25.23■■□□□ 1.63
UBR3-201ENST00000272793 CCER1Q8TC90 406 aaPredicted RBP25.09■■□□□ 1.61
UBR3-201ENST00000272793 EHMT2Q96KQ7 1210 aa24.84■■□□□ 1.57
UBR3-201ENST00000272793 SUPT5HO00267 1087 aaKnown RBP24.61■■□□□ 1.53
UBR3-201ENST00000272793 YTHDC1Q96MU7 727 aaKnown RBP24.23■■□□□ 1.47
UBR3-201ENST00000272793 APLP2Q06481 763 aa24.22■■□□□ 1.47
UBR3-201ENST00000272793 CENPBP07199 599 aaPredicted RBP24.21■■□□□ 1.47
UBR3-201ENST00000272793 DAXXQ9UER7 740 aaPredicted RBP24.18■■□□□ 1.46
UBR3-201ENST00000272793 NEFLP07196 543 aa24.1■■□□□ 1.45
UBR3-201ENST00000272793 TTBK1Q5TCY1 1321 aaPredicted RBP24.07■■□□□ 1.44
UBR3-201ENST00000272793 FAM9AQ8IZU1 332 aaPredicted RBP23.93■■□□□ 1.42
UBR3-201ENST00000272793 PCGF6Q9BYE7 350 aa23.86■■□□□ 1.41
UBR3-201ENST00000272793 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
UBR3-201ENST00000272793 ZNF316A6NFI3 1004 aaPredicted RBP23.47■■□□□ 1.35
UBR3-201ENST00000272793 ATP1B4Q9UN42 357 aaPredicted RBP23.46■■□□□ 1.35
UBR3-201ENST00000272793 RANGAP1P46060 587 aaPredicted RBP23.38■■□□□ 1.33
UBR3-201ENST00000272793 RTL5Q5HYW3 569 aaPredicted RBP23.37■■□□□ 1.33
UBR3-201ENST00000272793 CLSPNQ9HAW4 1339 aa23.2■■□□□ 1.3
UBR3-201ENST00000272793 ZEB1P37275 1124 aaPredicted RBP23.16■■□□□ 1.3
UBR3-201ENST00000272793 POLR3GLQ9BT43 218 aa23.13■■□□□ 1.29
UBR3-201ENST00000272793 CNGB1Q14028 1251 aaPredicted RBP23.03■■□□□ 1.28
UBR3-201ENST00000272793 SLC4A1APQ9BWU0 796 aaKnown RBP22.98■■□□□ 1.27
UBR3-201ENST00000272793 MYT1LQ9UL68 1186 aa22.85■■□□□ 1.25
UBR3-201ENST00000272793 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
UBR3-201ENST00000272793 PPARGC1BQ86YN6 1023 aaKnown RBP22.8■■□□□ 1.24
UBR3-201ENST00000272793 EIF5BO60841 1220 aaKnown RBP22.78■■□□□ 1.24
UBR3-201ENST00000272793 BCL11AQ9H165 835 aa22.69■■□□□ 1.22
UBR3-201ENST00000272793 ZBTB47Q9UFB7 747 aaPredicted RBP22.59■■□□□ 1.21
UBR3-201ENST00000272793 GLIPR1L2Q4G1C9 344 aa22.59■■□□□ 1.21
UBR3-201ENST00000272793 UBTFP17480 764 aaKnown RBP22.55■■□□□ 1.2
UBR3-201ENST00000272793 SLC24A1O60721 1099 aa22.54■■□□□ 1.2
UBR3-201ENST00000272793 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
UBR3-201ENST00000272793 HRCP23327 699 aa22.41■■□□□ 1.18
UBR3-201ENST00000272793 ANP32BQ92688 251 aaKnown RBP22.39■■□□□ 1.17
UBR3-201ENST00000272793 ITGAEP38570 1179 aa22.37■■□□□ 1.17
UBR3-201ENST00000272793 BCANQ96GW7 911 aa22.3■■□□□ 1.16
UBR3-201ENST00000272793 CDK11AQ9UQ88 783 aaPredicted RBP22.21■■□□□ 1.15
UBR3-201ENST00000272793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
UBR3-201ENST00000272793 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
UBR3-201ENST00000272793 TRIM26Q12899 539 aaPredicted RBP22.14■■□□□ 1.13
UBR3-201ENST00000272793 CDK11BP21127 795 aaKnown RBP22.12■■□□□ 1.13
UBR3-201ENST00000272793 CANXP27824 592 aaKnown RBP22.11■■□□□ 1.13
UBR3-201ENST00000272793 HSP90AA1P07900 732 aaKnown RBP22.08■■□□□ 1.12
UBR3-201ENST00000272793 DIEXFQ68CQ4 756 aaKnown RBP22.03■■□□□ 1.12
UBR3-201ENST00000272793 GTF3C3Q9Y5Q9 886 aa22.02■■□□□ 1.12
UBR3-201ENST00000272793 ANP32AP39687 249 aaKnown RBP22■■□□□ 1.11
UBR3-201ENST00000272793 NPM2Q86SE8 214 aaKnown RBP22■■□□□ 1.11
UBR3-201ENST00000272793 ARXQ96QS3 562 aa21.98■■□□□ 1.11
UBR3-201ENST00000272793 TNNT2P45379 298 aaPredicted RBP21.84■■□□□ 1.09
UBR3-201ENST00000272793 NEFMP07197 916 aa21.77■■□□□ 1.08
UBR3-201ENST00000272793 AMER1Q5JTC6 1135 aaPredicted RBP21.72■■□□□ 1.07
UBR3-201ENST00000272793 NBR1Q14596 966 aa21.69■■□□□ 1.06
UBR3-201ENST00000272793 TULP1O00294 542 aaPredicted RBP21.69■■□□□ 1.06
UBR3-201ENST00000272793 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
UBR3-201ENST00000272793 UPF2Q9HAU5 1272 aaKnown RBP21.64■■□□□ 1.05
UBR3-201ENST00000272793 NCBP3Q53F19 620 aaKnown RBP21.63■■□□□ 1.05
UBR3-201ENST00000272793 NEUROD1Q13562 356 aa21.59■■□□□ 1.05
UBR3-201ENST00000272793 ANP32CO43423 234 aa21.56■■□□□ 1.04
UBR3-201ENST00000272793 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
UBR3-201ENST00000272793 ZNF326Q5BKZ1 582 aaKnown RBP21.51■■□□□ 1.03
UBR3-201ENST00000272793 TRIM44Q96DX7 344 aaPredicted RBP21.47■■□□□ 1.03
UBR3-201ENST00000272793 TRIM52Q96A61 297 aa21.46■■□□□ 1.03
UBR3-201ENST00000272793 DNTTIP2Q5QJE6 756 aaKnown RBP21.42■■□□□ 1.02
UBR3-201ENST00000272793 FAM50AQ14320 339 aaKnown RBP21.42■■□□□ 1.02
UBR3-201ENST00000272793 ACIN1Q9UKV3 1341 aaKnown RBP21.27■■□□□ 1
UBR3-201ENST00000272793 TPRNQ4KMQ1 711 aa21.27■■□□□ 1
UBR3-201ENST00000272793 FKBP8Q14318 412 aa21.25■□□□□ 0.99
UBR3-201ENST00000272793 PTMAP06454 111 aaKnown RBP21.25■□□□□ 0.99
UBR3-201ENST00000272793 ZRSR1Q15695 479 aaKnown RBP21.24■□□□□ 0.99
UBR3-201ENST00000272793 NCLP19338 710 aaKnown RBP21.22■□□□□ 0.99
UBR3-201ENST00000272793 A0A0G2JS52 829 aa21.21■□□□□ 0.99
UBR3-201ENST00000272793 NAP1L5Q96NT1 182 aaPredicted RBP21.18■□□□□ 0.98
UBR3-201ENST00000272793 PRM3Q9NNZ6 103 aa21.1■□□□□ 0.97
UBR3-201ENST00000272793 SALL2Q9Y467 1007 aaPredicted RBP21.06■□□□□ 0.96
UBR3-201ENST00000272793 TAOK2Q9UL54 1235 aa21.05■□□□□ 0.96
UBR3-201ENST00000272793 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
UBR3-201ENST00000272793 PLPPR3Q6T4P5 718 aa21.03■□□□□ 0.96
UBR3-201ENST00000272793 CLSTN1O94985 981 aa21.02■□□□□ 0.96
UBR3-201ENST00000272793 RTN4Q9NQC3 1192 aaKnown RBP21.01■□□□□ 0.95
UBR3-201ENST00000272793 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.01■□□□□ 0.95
UBR3-201ENST00000272793 PLCB2Q00722 1185 aa20.99■□□□□ 0.95
UBR3-201ENST00000272793 GOLGA6L22H0YM25 854 aa20.99■□□□□ 0.95
UBR3-201ENST00000272793 MYH16Q9H6N6 1097 aa20.97■□□□□ 0.95
UBR3-201ENST00000272793 CCDC136Q96JN2 1154 aa20.93■□□□□ 0.94
UBR3-201ENST00000272793 BECN1Q14457 450 aa20.91■□□□□ 0.94
UBR3-201ENST00000272793 CALRP27797 417 aaKnown RBP20.91■□□□□ 0.94
UBR3-201ENST00000272793 GOLGA6L6A8MZA4 724 aa20.91■□□□□ 0.94
UBR3-201ENST00000272793 HNRNPUQ00839 825 aaKnown RBP eCLIP20.9■□□□□ 0.94
UBR3-201ENST00000272793 FAM9BQ8IZU0 186 aa20.89■□□□□ 0.93
UBR3-201ENST00000272793 ANP32EQ9BTT0 268 aa20.89■□□□□ 0.93
UBR3-201ENST00000272793 TNNT3P45378 269 aaPredicted RBP20.87■□□□□ 0.93
UBR3-201ENST00000272793 IRX6P78412 446 aaPredicted RBP20.87■□□□□ 0.93
UBR3-201ENST00000272793 NOC3LQ8WTT2 800 aaKnown RBP20.87■□□□□ 0.93
UBR3-201ENST00000272793 CHAF1AQ13111 956 aaPredicted RBP20.83■□□□□ 0.93
UBR3-201ENST00000272793 ARID4BQ4LE39 1312 aaPredicted RBP20.82■□□□□ 0.92
UBR3-201ENST00000272793 ERICH6BQ5W0A0 696 aa20.81■□□□□ 0.92
UBR3-201ENST00000272793 STAG3Q9UJ98 1225 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms