RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.37
VCL-207ENST00000624354 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
VCL-207ENST00000624354 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
VCL-207ENST00000624354 SUPT5HO00267 1087 aaKnown RBP14.82□□□□□ -0.04
VCL-207ENST00000624354 ZCCHC6Q5VYS8 1495 aaKnown RBP14.74□□□□□ -0.05
VCL-207ENST00000624354 CCDC180Q9P1Z9 1646 aa14.66□□□□□ -0.06
VCL-207ENST00000624354 CHIC1Q5VXU3 224 aa14.48□□□□□ -0.09
VCL-207ENST00000624354 MYO15BQ96JP2 1530 aa14.4□□□□□ -0.1
VCL-207ENST00000624354 HRCP23327 699 aa14.35□□□□□ -0.11
VCL-207ENST00000624354 ABCC9O60706 1549 aa14.34□□□□□ -0.11
VCL-207ENST00000624354 DCAF1Q9Y4B6 1507 aa14.27□□□□□ -0.13
VCL-207ENST00000624354 PCGF6Q9BYE7 350 aa14.23□□□□□ -0.13
VCL-207ENST00000624354 PELP1Q8IZL8 1130 aaKnown RBP14.22□□□□□ -0.13
VCL-207ENST00000624354 LOC105371045A0A1W2PR82 267 aa14.05□□□□□ -0.16
VCL-207ENST00000624354 PPARGC1BQ86YN6 1023 aaKnown RBP13.99□□□□□ -0.17
VCL-207ENST00000624354 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
VCL-207ENST00000624354 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
VCL-207ENST00000624354 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
VCL-207ENST00000624354 TRIM41Q8WV44 630 aa13.8□□□□□ -0.2
VCL-207ENST00000624354 SCRIBQ14160 1630 aa13.79□□□□□ -0.2
VCL-207ENST00000624354 MYT1Q01538 1121 aa13.75□□□□□ -0.21
VCL-207ENST00000624354 ZEB1P37275 1124 aaPredicted RBP13.74□□□□□ -0.21
VCL-207ENST00000624354 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.21
VCL-207ENST00000624354 FAM9AQ8IZU1 332 aaPredicted RBP13.68□□□□□ -0.22
VCL-207ENST00000624354 SCAF1Q9H7N4 1312 aaKnown RBP13.66□□□□□ -0.22
VCL-207ENST00000624354 NACADO15069 1562 aa13.56□□□□□ -0.24
VCL-207ENST00000624354 CECR2Q9BXF3 1484 aa13.55□□□□□ -0.24
VCL-207ENST00000624354 EHMT2Q96KQ7 1210 aa13.55□□□□□ -0.24
VCL-207ENST00000624354 MROH2BQ7Z745 1585 aa13.52□□□□□ -0.24
VCL-207ENST00000624354 WIZO95785 1651 aa13.43□□□□□ -0.26
VCL-207ENST00000624354 BAZ1AQ9NRL2 1556 aaPredicted RBP13.38□□□□□ -0.27
VCL-207ENST00000624354 CCER1Q8TC90 406 aaPredicted RBP13.33□□□□□ -0.28
VCL-207ENST00000624354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.32□□□□□ -0.28
VCL-207ENST00000624354 EIF4G1Q04637 1599 aaKnown RBP13.31□□□□□ -0.28
VCL-207ENST00000624354 ACIN1Q9UKV3 1341 aaKnown RBP13.3□□□□□ -0.28
VCL-207ENST00000624354 UNC13AQ9UPW8 1703 aa13.27□□□□□ -0.29
VCL-207ENST00000624354 TOP2AP11388 1531 aaKnown RBP13.25□□□□□ -0.29
VCL-207ENST00000624354 WRNQ14191 1432 aaPredicted RBP eCLIP13.24□□□□□ -0.29
VCL-207ENST00000624354 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
VCL-207ENST00000624354 NEUROD1Q13562 356 aa13.22□□□□□ -0.29
VCL-207ENST00000624354 ABCC8Q09428 1581 aa13.22□□□□□ -0.29
VCL-207ENST00000624354 CEP162Q5TB80 1403 aa13.2□□□□□ -0.3
VCL-207ENST00000624354 GTF3C3Q9Y5Q9 886 aa13.19□□□□□ -0.3
VCL-207ENST00000624354 SMARCA4P51532 1647 aa13.19□□□□□ -0.3
VCL-207ENST00000624354 TNIKQ9UKE5 1360 aa13.18□□□□□ -0.3
VCL-207ENST00000624354 SMARCA2P51531 1590 aa13.17□□□□□ -0.3
VCL-207ENST00000624354 TTBK1Q5TCY1 1321 aaPredicted RBP13.17□□□□□ -0.3
VCL-207ENST00000624354 EEA1Q15075 1411 aa13.16□□□□□ -0.3
VCL-207ENST00000624354 SOGA1O94964 1423 aa13.16□□□□□ -0.3
VCL-207ENST00000624354 CENPBP07199 599 aaPredicted RBP13.15□□□□□ -0.3
VCL-207ENST00000624354 DIEXFQ68CQ4 756 aaKnown RBP13.15□□□□□ -0.3
VCL-207ENST00000624354 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.3
VCL-207ENST00000624354 BICRAQ9NZM4 1560 aa13.15□□□□□ -0.3
VCL-207ENST00000624354 UBTFP17480 764 aaKnown RBP13.13□□□□□ -0.31
VCL-207ENST00000624354 GOLGA3Q08378 1498 aa13.07□□□□□ -0.32
VCL-207ENST00000624354 RUSC2Q8N2Y8 1516 aa13.06□□□□□ -0.32
VCL-207ENST00000624354 DNAJC5BQ9UF47 199 aa13.02□□□□□ -0.33
VCL-207ENST00000624354 ZNF316A6NFI3 1004 aaPredicted RBP13.01□□□□□ -0.33
VCL-207ENST00000624354 CEP164Q9UPV0 1460 aa12.98□□□□□ -0.33
VCL-207ENST00000624354 CLIP1P30622 1438 aa12.93□□□□□ -0.34
VCL-207ENST00000624354 HNRNPUL2Q1KMD3 747 aaKnown RBP12.93□□□□□ -0.34
VCL-207ENST00000624354 PEG3Q9GZU2 1588 aa12.93□□□□□ -0.34
VCL-207ENST00000624354 APLP2Q06481 763 aa12.91□□□□□ -0.34
VCL-207ENST00000624354 KIF21BO75037 1637 aa12.91□□□□□ -0.34
VCL-207ENST00000624354 SYNJ1O43426 1573 aa12.89□□□□□ -0.35
VCL-207ENST00000624354 VPS8Q8N3P4 1428 aa12.89□□□□□ -0.35
VCL-207ENST00000624354 BAZ1BQ9UIG0 1483 aaKnown RBP12.87□□□□□ -0.35
VCL-207ENST00000624354 YTHDC1Q96MU7 727 aaKnown RBP12.85□□□□□ -0.35
VCL-207ENST00000624354 ATAD2BQ9ULI0 1458 aa12.84□□□□□ -0.35
VCL-207ENST00000624354 RAPGEF2Q9Y4G8 1499 aa12.83□□□□□ -0.36
VCL-207ENST00000624354 MIER1Q8N108 512 aa12.82□□□□□ -0.36
VCL-207ENST00000624354 RANGAP1P46060 587 aaPredicted RBP12.8□□□□□ -0.36
VCL-207ENST00000624354 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
VCL-207ENST00000624354 CLSPNQ9HAW4 1339 aa12.75□□□□□ -0.37
VCL-207ENST00000624354 TOP2BQ02880 1626 aa12.73□□□□□ -0.37
VCL-207ENST00000624354 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
VCL-207ENST00000624354 PRXQ9BXM0 1461 aa12.69□□□□□ -0.38
VCL-207ENST00000624354 DHX57Q6P158 1386 aaKnown RBP12.68□□□□□ -0.38
VCL-207ENST00000624354 BIVM-ERCC5R4GMW8 1640 aa12.66□□□□□ -0.38
VCL-207ENST00000624354 ARAP1Q96P48 1450 aa12.66□□□□□ -0.38
VCL-207ENST00000624354 ANP32EQ9BTT0 268 aa12.66□□□□□ -0.38
VCL-207ENST00000624354 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.38
VCL-207ENST00000624354 KANK4Q5T7N3 995 aaPredicted RBP12.65□□□□□ -0.38
VCL-207ENST00000624354 KIF27Q86VH2 1401 aa12.62□□□□□ -0.39
VCL-207ENST00000624354 RRBP1Q9P2E9 1410 aaKnown RBP12.61□□□□□ -0.39
VCL-207ENST00000624354 CUX1P39880 1505 aa12.57□□□□□ -0.4
VCL-207ENST00000624354 CCNB3Q8WWL7 1395 aa12.57□□□□□ -0.4
VCL-207ENST00000624354 NCAPD3P42695 1498 aa12.57□□□□□ -0.4
VCL-207ENST00000624354 CUX2O14529 1486 aa12.55□□□□□ -0.4
VCL-207ENST00000624354 HMGXB3Q12766 1538 aa12.55□□□□□ -0.4
VCL-207ENST00000624354 NESP48681 1621 aa12.55□□□□□ -0.4
VCL-207ENST00000624354 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
VCL-207ENST00000624354 ITGAEP38570 1179 aa12.52□□□□□ -0.4
VCL-207ENST00000624354 CFTRP13569 1480 aa12.51□□□□□ -0.41
VCL-207ENST00000624354 TSHZ2Q9NRE2 1034 aa12.5□□□□□ -0.41
VCL-207ENST00000624354 SUPT16HQ9Y5B9 1047 aaKnown RBP12.5□□□□□ -0.41
VCL-207ENST00000624354 RAB3GAP2Q9H2M9 1393 aa12.47□□□□□ -0.41
VCL-207ENST00000624354 IGF1RP08069 1367 aa12.45□□□□□ -0.42
VCL-207ENST00000624354 MAP3K1Q13233 1512 aa12.44□□□□□ -0.42
VCL-207ENST00000624354 SETD5Q9C0A6 1442 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms