Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SHANK1Q9Y566 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHANK1Q9Y566 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHANK1Q9Y566 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.42■■□□□ 1.18
SHANK1Q9Y566 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SHANK1Q9Y566 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.42■■□□□ 1.18
SHANK1Q9Y566 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.41■■□□□ 1.18
SHANK1Q9Y566 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHANK1Q9Y566 YBX1P4-201ENST00000392794 808 ntBASIC22.41■■□□□ 1.18
SHANK1Q9Y566 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.41■■□□□ 1.18
SHANK1Q9Y566 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
SHANK1Q9Y566 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SHANK1Q9Y566 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SHANK1Q9Y566 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
SHANK1Q9Y566 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
SHANK1Q9Y566 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SHANK1Q9Y566 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
SHANK1Q9Y566 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SHANK1Q9Y566 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.38■■□□□ 1.17
SHANK1Q9Y566 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHANK1Q9Y566 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHANK1Q9Y566 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.38■■□□□ 1.17
SHANK1Q9Y566 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.37■■□□□ 1.17
SHANK1Q9Y566 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHANK1Q9Y566 ST7-AS1-201ENST00000456775 1889 ntBASIC22.35■■□□□ 1.17
SHANK1Q9Y566 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 AP004833.2-201ENST00000532228 1454 ntBASIC22.35■■□□□ 1.17
SHANK1Q9Y566 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHANK1Q9Y566 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 AL356441.2-201ENST00000443009 864 ntBASIC22.34■■□□□ 1.17
SHANK1Q9Y566 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 MIR3960-201ENST00000583311 91 ntBASIC22.34■■□□□ 1.17
SHANK1Q9Y566 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.34■■□□□ 1.17
SHANK1Q9Y566 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHANK1Q9Y566 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.33■■□□□ 1.16
SHANK1Q9Y566 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
SHANK1Q9Y566 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHANK1Q9Y566 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
SHANK1Q9Y566 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHANK1Q9Y566 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.32■■□□□ 1.16
SHANK1Q9Y566 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SHANK1Q9Y566 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.32■■□□□ 1.16
SHANK1Q9Y566 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHANK1Q9Y566 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
SHANK1Q9Y566 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
SHANK1Q9Y566 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.31■■□□□ 1.16
SHANK1Q9Y566 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SHANK1Q9Y566 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.31■■□□□ 1.16
SHANK1Q9Y566 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.3■■□□□ 1.16
SHANK1Q9Y566 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHANK1Q9Y566 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
SHANK1Q9Y566 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.3■■□□□ 1.16
SHANK1Q9Y566 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SHANK1Q9Y566 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHANK1Q9Y566 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHANK1Q9Y566 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHANK1Q9Y566 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms