RNA–Protein interactions for RNA: ENST00000585409.2

LSM7-203, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM7, Length 512 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-203ENST00000585409 NISCHQ9Y2I1 1504 aa57.56■■■■■ 6.81
LSM7-203ENST00000585409 ABCC9O60706 1549 aa52.04■■■■■ 5.92
LSM7-203ENST00000585409 CCDC180Q9P1Z9 1646 aa51.86■■■■■ 5.89
LSM7-203ENST00000585409 RB1CC1Q8TDY2 1594 aa49.46■■■■■ 5.51
LSM7-203ENST00000585409 DNAJC5BQ9UF47 199 aa49.11■■■■■ 5.45
LSM7-203ENST00000585409 NACADO15069 1562 aa49.06■■■■■ 5.44
LSM7-203ENST00000585409 DCAF8L2P0C7V8 631 aa48.52■■■■■ 5.36
LSM7-203ENST00000585409 UNC13AQ9UPW8 1703 aa48.44■■■■■ 5.34
LSM7-203ENST00000585409 PABPN1Q86U42 306 aaKnown RBP eCLIP48.35■■■■■ 5.33
LSM7-203ENST00000585409 MYO15BQ96JP2 1530 aa48.33■■■■■ 5.33
LSM7-203ENST00000585409 BICRAQ9NZM4 1560 aa48.08■■■■■ 5.29
LSM7-203ENST00000585409 ZCCHC6Q5VYS8 1495 aaKnown RBP47.65■■■■■ 5.22
LSM7-203ENST00000585409 DCAF1Q9Y4B6 1507 aa47.59■■■■■ 5.21
LSM7-203ENST00000585409 SHROOM4Q9ULL8 1493 aa47.4■■■■■ 5.18
LSM7-203ENST00000585409 SCRIBQ14160 1630 aa47.14■■■■■ 5.14
LSM7-203ENST00000585409 CC2D2AQ9P2K1 1620 aa47.05■■■■■ 5.12
LSM7-203ENST00000585409 CECR2Q9BXF3 1484 aa46.93■■■■■ 5.1
LSM7-203ENST00000585409 EIF4G1Q04637 1599 aaKnown RBP46.88■■■■■ 5.1
LSM7-203ENST00000585409 DNAJC5Q9H3Z4 198 aa45.33■■■■■ 4.85
LSM7-203ENST00000585409 NCAPD3P42695 1498 aa45.29■■■■■ 4.84
LSM7-203ENST00000585409 ATAD2BQ9ULI0 1458 aa45.09■■■■■ 4.81
LSM7-203ENST00000585409 CUX2O14529 1486 aa45.04■■■■■ 4.8
LSM7-203ENST00000585409 SMARCA4P51532 1647 aa44.99■■■■■ 4.79
LSM7-203ENST00000585409 SMARCA2P51531 1590 aa44.95■■■■■ 4.79
LSM7-203ENST00000585409 HMGXB3Q12766 1538 aa44.95■■■■■ 4.79
LSM7-203ENST00000585409 ERCC6Q03468 1493 aa44.93■■■■■ 4.78
LSM7-203ENST00000585409 BAZ1AQ9NRL2 1556 aaPredicted RBP44.71■■■■■ 4.75
LSM7-203ENST00000585409 NESP48681 1621 aa44.64■■■■■ 4.74
LSM7-203ENST00000585409 PEG3Q9GZU2 1588 aa44.6■■■■■ 4.73
LSM7-203ENST00000585409 BAZ1BQ9UIG0 1483 aaKnown RBP44.6■■■■■ 4.73
LSM7-203ENST00000585409 MROH2BQ7Z745 1585 aa44.34■■■■■ 4.69
LSM7-203ENST00000585409 LAMC3Q9Y6N6 1575 aa44.33■■■■■ 4.69
LSM7-203ENST00000585409 THOC2Q8NI27 1593 aaKnown RBP44.32■■■■■ 4.69
LSM7-203ENST00000585409 KIF21AQ7Z4S6 1674 aa44.11■■■■■ 4.65
LSM7-203ENST00000585409 PDS5BQ9NTI5 1447 aa44.02■■■■■ 4.64
LSM7-203ENST00000585409 CADPSQ9ULU8 1353 aa43.85■■■■■ 4.61
LSM7-203ENST00000585409 WIZO95785 1651 aa43.81■■■■■ 4.6
LSM7-203ENST00000585409 MRC2Q9UBG0 1479 aa43.69■■■■■ 4.58
LSM7-203ENST00000585409 WDR62O43379 1518 aa43.63■■■■■ 4.57
LSM7-203ENST00000585409 CEP164Q9UPV0 1460 aa43.44■■■■■ 4.54
LSM7-203ENST00000585409 FANCD2Q9BXW9 1451 aa43.37■■■■■ 4.53
LSM7-203ENST00000585409 CFTRP13569 1480 aa43.32■■■■■ 4.53
LSM7-203ENST00000585409 RSF1Q96T23 1441 aaPredicted RBP43.3■■■■■ 4.52
LSM7-203ENST00000585409 TOP2AP11388 1531 aaKnown RBP43.23■■■■■ 4.51
LSM7-203ENST00000585409 TRIM41Q8WV44 630 aa43.1■■■■■ 4.49
LSM7-203ENST00000585409 URB2Q14146 1524 aaKnown RBP43.06■■■■■ 4.48
LSM7-203ENST00000585409 PRDM2Q13029 1718 aa42.95■■■■■ 4.47
LSM7-203ENST00000585409 OSCARQ8IYS5 282 aa42.85■■■■■ 4.45
LSM7-203ENST00000585409 CCDC88BA6NC98 1476 aa42.72■■■■■ 4.43
LSM7-203ENST00000585409 IFT140Q96RY7 1462 aa42.59■■■■■ 4.41
LSM7-203ENST00000585409 ZNF608Q9ULD9 1512 aaPredicted RBP42.55■■■■■ 4.4
LSM7-203ENST00000585409 TOPBP1Q92547 1522 aa42.53■■■■■ 4.4
LSM7-203ENST00000585409 RIMBP3CA6NJZ7 1639 aa42.42■■■■■ 4.38
LSM7-203ENST00000585409 RIMBP3BA6NNM3 1639 aa42.42■■■■■ 4.38
LSM7-203ENST00000585409 RIMBP3Q9UFD9 1639 aa42.42■■■■■ 4.38
LSM7-203ENST00000585409 ABCC8Q09428 1581 aa42.41■■■■■ 4.38
LSM7-203ENST00000585409 DNMBPQ6XZF7 1577 aa42.35■■■■■ 4.37
LSM7-203ENST00000585409 EIF4G3O43432 1585 aaKnown RBP42.34■■■■■ 4.37
LSM7-203ENST00000585409 ARHGEF11O15085 1522 aa42.23■■■■■ 4.35
LSM7-203ENST00000585409 TARBP1Q13395 1621 aaKnown RBP42.22■■■■■ 4.35
LSM7-203ENST00000585409 CHD1O14646 1710 aa42.1■■■■■ 4.33
LSM7-203ENST00000585409 AQRO60306 1485 aaKnown RBP eCLIP42.1■■■■■ 4.333e-7■■■■□ 21.6
LSM7-203ENST00000585409 POLA1P09884 1462 aaPredicted RBP42.06■■■■■ 4.32
LSM7-203ENST00000585409 RAD54L2Q9Y4B4 1467 aa41.89■■■■■ 4.3
LSM7-203ENST00000585409 CYB5RLQ6IPT4 315 aa41.83■■■■■ 4.29
LSM7-203ENST00000585409 SOGA1O94964 1423 aa41.83■■■■■ 4.29
LSM7-203ENST00000585409 ARAP1Q96P48 1450 aa41.79■■■■■ 4.28
LSM7-203ENST00000585409 WDR97A6NE52 1622 aa41.79■■■■■ 4.28
LSM7-203ENST00000585409 FBLN2P98095 1184 aa41.78■■■■■ 4.28
LSM7-203ENST00000585409 TDRD9Q8NDG6 1382 aaKnown RBP41.77■■■■■ 4.28
LSM7-203ENST00000585409 FGD5Q6ZNL6 1462 aa41.74■■■■■ 4.27
LSM7-203ENST00000585409 CUX1P39880 1505 aa41.69■■■■■ 4.26
LSM7-203ENST00000585409 SNAPC4Q5SXM2 1469 aa41.67■■■■■ 4.26
LSM7-203ENST00000585409 CLASP1Q7Z460 1538 aa41.61■■■■■ 4.25
LSM7-203ENST00000585409 MAGI1Q96QZ7 1491 aaPredicted RBP41.59■■■■■ 4.25
LSM7-203ENST00000585409 GRIN2BQ13224 1484 aa41.53■■■■■ 4.24
LSM7-203ENST00000585409 SYNJ1O43426 1573 aa41.52■■■■■ 4.24
LSM7-203ENST00000585409 CHMP7Q8WUX9 453 aaPredicted RBP41.47■■■■■ 4.23
LSM7-203ENST00000585409 TRHP20396 242 aaPredicted RBP41.44■■■■■ 4.22
LSM7-203ENST00000585409 SYNJ2O15056 1496 aa41.44■■■■■ 4.22
LSM7-203ENST00000585409 PBRM1Q86U86 1689 aa41.4■■■■■ 4.22
LSM7-203ENST00000585409 GAPVD1Q14C86 1478 aa41.34■■■■■ 4.21
LSM7-203ENST00000585409 ABCA5Q8WWZ7 1642 aa41.29■■■■■ 4.2
LSM7-203ENST00000585409 ABCA10Q8WWZ4 1543 aa41.28■■■■■ 4.2
LSM7-203ENST00000585409 SUPT5HO00267 1087 aaKnown RBP41.26■■■■■ 4.2
LSM7-203ENST00000585409 WRNQ14191 1432 aaPredicted RBP eCLIP41.01■■■■■ 4.16
LSM7-203ENST00000585409 GRIN2AQ12879 1464 aa41.01■■■■■ 4.16
LSM7-203ENST00000585409 BIVM-ERCC5R4GMW8 1640 aa40.98■■■■■ 4.15
LSM7-203ENST00000585409 ADAMTS12P58397 1594 aa40.97■■■■■ 4.15
LSM7-203ENST00000585409 TOP2BQ02880 1626 aa40.95■■■■■ 4.15
LSM7-203ENST00000585409 NUP160Q12769 1436 aa40.91■■■■■ 4.14
LSM7-203ENST00000585409 CEP170Q5SW79 1584 aa40.91■■■■■ 4.14
LSM7-203ENST00000585409 ERCC6L2Q5T890 1561 aa40.91■■■■■ 4.14
LSM7-203ENST00000585409 FHAD1B1AJZ9 1412 aa40.81■■■■■ 4.12
LSM7-203ENST00000585409 SHROOM2Q13796 1616 aa40.81■■■■■ 4.12
LSM7-203ENST00000585409 ERICH3Q5RHP9 1530 aa40.77■■■■■ 4.12
LSM7-203ENST00000585409 PRG4Q92954 1404 aaPredicted RBP40.48■■■■■ 4.07
LSM7-203ENST00000585409 AEBP2Q6ZN18 517 aaPredicted RBP40.44■■■■■ 4.06
LSM7-203ENST00000585409 KIF13AQ9H1H9 1805 aa40.44■■■■■ 4.06
LSM7-203ENST00000585409 JPH4Q96JJ6 628 aa40.41■■■■■ 4.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms