Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NKX3-1Q99801 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NKX3-1Q99801 AC142472.1-201ENST00000612013 1741 ntBASIC21.24■□□□□ 0.99
NKX3-1Q99801 WHAMMP3-201ENST00000611636 1609 ntBASIC21.23■□□□□ 0.99
NKX3-1Q99801 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.23■□□□□ 0.99
NKX3-1Q99801 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NKX3-1Q99801 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX3-1Q99801 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NKX3-1Q99801 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX3-1Q99801 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX3-1Q99801 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NKX3-1Q99801 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.22■□□□□ 0.99
NKX3-1Q99801 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.22■□□□□ 0.99
NKX3-1Q99801 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX3-1Q99801 ERN1-208ENST00000606895 2068 ntBASIC21.21■□□□□ 0.99
NKX3-1Q99801 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX3-1Q99801 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.21■□□□□ 0.99
NKX3-1Q99801 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NKX3-1Q99801 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NKX3-1Q99801 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NKX3-1Q99801 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX3-1Q99801 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.2■□□□□ 0.98
NKX3-1Q99801 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NKX3-1Q99801 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NKX3-1Q99801 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX3-1Q99801 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX3-1Q99801 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX3-1Q99801 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NKX3-1Q99801 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.19■□□□□ 0.98
NKX3-1Q99801 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX3-1Q99801 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NKX3-1Q99801 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX3-1Q99801 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX3-1Q99801 MIR7108-201ENST00000614319 87 ntBASIC21.18■□□□□ 0.98
NKX3-1Q99801 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX3-1Q99801 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NKX3-1Q99801 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX3-1Q99801 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
NKX3-1Q99801 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX3-1Q99801 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NKX3-1Q99801 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
NKX3-1Q99801 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
NKX3-1Q99801 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX3-1Q99801 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX3-1Q99801 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NKX3-1Q99801 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NKX3-1Q99801 DUX4L29-201ENST00000425409 679 ntBASIC21.15■□□□□ 0.98
NKX3-1Q99801 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX3-1Q99801 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX3-1Q99801 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX3-1Q99801 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX3-1Q99801 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NKX3-1Q99801 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX3-1Q99801 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.14■□□□□ 0.97
NKX3-1Q99801 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX3-1Q99801 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX3-1Q99801 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.13■□□□□ 0.97
NKX3-1Q99801 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
NKX3-1Q99801 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX3-1Q99801 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX3-1Q99801 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX3-1Q99801 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX3-1Q99801 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.11■□□□□ 0.97
NKX3-1Q99801 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX3-1Q99801 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX3-1Q99801 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX3-1Q99801 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX3-1Q99801 AC093323.1-202ENST00000635031 2045 ntBASIC21.1■□□□□ 0.97
NKX3-1Q99801 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX3-1Q99801 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NKX3-1Q99801 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX3-1Q99801 ZNRF2P2-203ENST00000454624 420 ntBASIC21.09■□□□□ 0.97
NKX3-1Q99801 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NKX3-1Q99801 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.09■□□□□ 0.97
NKX3-1Q99801 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NKX3-1Q99801 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX3-1Q99801 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
NKX3-1Q99801 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX3-1Q99801 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NKX3-1Q99801 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX3-1Q99801 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.08■□□□□ 0.97
NKX3-1Q99801 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX3-1Q99801 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX3-1Q99801 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX3-1Q99801 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
NKX3-1Q99801 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX3-1Q99801 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX3-1Q99801 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NKX3-1Q99801 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX3-1Q99801 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX3-1Q99801 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NKX3-1Q99801 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.06■□□□□ 0.96
NKX3-1Q99801 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NKX3-1Q99801 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NKX3-1Q99801 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms