RNA–Protein interactions for RNA: ENST00000371746.7

LHX3-201, Transcript of LIM homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LHX3, Length 2,403 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3-201ENST00000371746 NISCHQ9Y2I1 1504 aa52.16■■■■■ 5.94
LHX3-201ENST00000371746 CCDC180Q9P1Z9 1646 aa44.94■■■■■ 4.78
LHX3-201ENST00000371746 ZCCHC6Q5VYS8 1495 aaKnown RBP43.93■■■■■ 4.62
LHX3-201ENST00000371746 SHROOM4Q9ULL8 1493 aa43.44■■■■■ 4.55
LHX3-201ENST00000371746 DCAF8L2P0C7V8 631 aa43.32■■■■■ 4.53
LHX3-201ENST00000371746 DCAF1Q9Y4B6 1507 aa42.91■■■■■ 4.46
LHX3-201ENST00000371746 ABCC9O60706 1549 aa42.39■■■■■ 4.38
LHX3-201ENST00000371746 MYO15BQ96JP2 1530 aa42.12■■■■■ 4.33
LHX3-201ENST00000371746 SUPT5HO00267 1087 aaKnown RBP42.09■■■■■ 4.33
LHX3-201ENST00000371746 NACADO15069 1562 aa41.79■■■■■ 4.28
LHX3-201ENST00000371746 SCRIBQ14160 1630 aa41.79■■■■■ 4.28
LHX3-201ENST00000371746 RB1CC1Q8TDY2 1594 aa41.33■■■■■ 4.21
LHX3-201ENST00000371746 RSF1Q96T23 1441 aaPredicted RBP40.82■■■■■ 4.13
LHX3-201ENST00000371746 CECR2Q9BXF3 1484 aa40.68■■■■■ 4.1
LHX3-201ENST00000371746 UNC13AQ9UPW8 1703 aa40.57■■■■■ 4.08
LHX3-201ENST00000371746 CHIC1Q5VXU3 224 aa40.46■■■■■ 4.07
LHX3-201ENST00000371746 MROH2BQ7Z745 1585 aa40.44■■■■■ 4.06
LHX3-201ENST00000371746 PABPN1Q86U42 306 aaKnown RBP eCLIP40.25■■■■■ 4.03
LHX3-201ENST00000371746 BICRAQ9NZM4 1560 aa40.19■■■■■ 4.02
LHX3-201ENST00000371746 BAZ1AQ9NRL2 1556 aaPredicted RBP40.17■■■■■ 4.02
LHX3-201ENST00000371746 WIZO95785 1651 aa40.13■■■■■ 4.01
LHX3-201ENST00000371746 SMARCA4P51532 1647 aa39.95■■■■□ 3.99
LHX3-201ENST00000371746 TOP2AP11388 1531 aaKnown RBP39.59■■■■□ 3.93
LHX3-201ENST00000371746 TRIM41Q8WV44 630 aa39.36■■■■□ 3.89
LHX3-201ENST00000371746 CCDC88BA6NC98 1476 aa39.34■■■■□ 3.89
LHX3-201ENST00000371746 PEG3Q9GZU2 1588 aa39.31■■■■□ 3.88
LHX3-201ENST00000371746 SMARCA2P51531 1590 aa39.3■■■■□ 3.88
LHX3-201ENST00000371746 EIF4G1Q04637 1599 aaKnown RBP39.19■■■■□ 3.86
LHX3-201ENST00000371746 ATAD2BQ9ULI0 1458 aa39.19■■■■□ 3.86
LHX3-201ENST00000371746 LOC105371045A0A1W2PR82 267 aa39.13■■■■□ 3.85
LHX3-201ENST00000371746 BAZ1BQ9UIG0 1483 aaKnown RBP39.01■■■■□ 3.84
LHX3-201ENST00000371746 FAM9AQ8IZU1 332 aaPredicted RBP38.89■■■■□ 3.82
LHX3-201ENST00000371746 ABCC8Q09428 1581 aa38.82■■■■□ 3.8
LHX3-201ENST00000371746 NCAPD3P42695 1498 aa38.66■■■■□ 3.78
LHX3-201ENST00000371746 HMGXB3Q12766 1538 aa38.59■■■■□ 3.77
LHX3-201ENST00000371746 EHMT2Q96KQ7 1210 aa38.5■■■■□ 3.75
LHX3-201ENST00000371746 WRNQ14191 1432 aaPredicted RBP eCLIP38.38■■■■□ 3.73
LHX3-201ENST00000371746 SOGA1O94964 1423 aa38.25■■■■□ 3.71
LHX3-201ENST00000371746 CC2D2AQ9P2K1 1620 aa38.22■■■■□ 3.71
LHX3-201ENST00000371746 SYNJ1O43426 1573 aa38.21■■■■□ 3.71
LHX3-201ENST00000371746 RUSC2Q8N2Y8 1516 aa38.09■■■■□ 3.69
LHX3-201ENST00000371746 CFTRP13569 1480 aa38.03■■■■□ 3.68
LHX3-201ENST00000371746 PCGF6Q9BYE7 350 aa37.99■■■■□ 3.67
LHX3-201ENST00000371746 EEA1Q15075 1411 aa37.98■■■■□ 3.67
LHX3-201ENST00000371746 CSRNP3Q8WYN3 585 aa37.95■■■■□ 3.66
LHX3-201ENST00000371746 TOP2BQ02880 1626 aa37.88■■■■□ 3.65
LHX3-201ENST00000371746 CADPSQ9ULU8 1353 aa37.8■■■■□ 3.64
LHX3-201ENST00000371746 BIVM-ERCC5R4GMW8 1640 aa37.76■■■■□ 3.64
LHX3-201ENST00000371746 CUX1P39880 1505 aa37.74■■■■□ 3.63
LHX3-201ENST00000371746 UBTFP17480 764 aaKnown RBP37.64■■■■□ 3.62
LHX3-201ENST00000371746 PRDM2Q13029 1718 aa37.63■■■■□ 3.61
LHX3-201ENST00000371746 TNIKQ9UKE5 1360 aa37.62■■■■□ 3.61
LHX3-201ENST00000371746 GOLGA3Q08378 1498 aa37.62■■■■□ 3.61
LHX3-201ENST00000371746 TRIM26Q12899 539 aaPredicted RBP37.61■■■■□ 3.61
LHX3-201ENST00000371746 CEP162Q5TB80 1403 aa37.58■■■■□ 3.61
LHX3-201ENST00000371746 CEP164Q9UPV0 1460 aa37.54■■■■□ 3.6
LHX3-201ENST00000371746 KIF21BO75037 1637 aa37.49■■■■□ 3.59
LHX3-201ENST00000371746 DNAJC5BQ9UF47 199 aa37.46■■■■□ 3.59
LHX3-201ENST00000371746 NESP48681 1621 aa37.44■■■■□ 3.58
LHX3-201ENST00000371746 FANCD2Q9BXW9 1451 aa37.42■■■■□ 3.58
LHX3-201ENST00000371746 RAPGEF2Q9Y4G8 1499 aa37.39■■■■□ 3.58
LHX3-201ENST00000371746 PPARGC1BQ86YN6 1023 aaKnown RBP37.38■■■■□ 3.57
LHX3-201ENST00000371746 KIF27Q86VH2 1401 aa37.31■■■■□ 3.56
LHX3-201ENST00000371746 HRCP23327 699 aa37.26■■■■□ 3.56
LHX3-201ENST00000371746 FGD5Q6ZNL6 1462 aa37.24■■■■□ 3.55
LHX3-201ENST00000371746 PRXQ9BXM0 1461 aa37.22■■■■□ 3.55
LHX3-201ENST00000371746 LAMC3Q9Y6N6 1575 aa37.18■■■■□ 3.54
LHX3-201ENST00000371746 CUX2O14529 1486 aa37.16■■■■□ 3.54
LHX3-201ENST00000371746 CLIP1P30622 1438 aa37.13■■■■□ 3.53
LHX3-201ENST00000371746 ERICH3Q5RHP9 1530 aa37.11■■■■□ 3.53
LHX3-201ENST00000371746 RANGAP1P46060 587 aaPredicted RBP37.08■■■■□ 3.53
LHX3-201ENST00000371746 DNMBPQ6XZF7 1577 aa37.08■■■■□ 3.53
LHX3-201ENST00000371746 TOPBP1Q92547 1522 aa37.06■■■■□ 3.52
LHX3-201ENST00000371746 IGF1RP08069 1367 aa36.99■■■■□ 3.51
LHX3-201ENST00000371746 TTBK1Q5TCY1 1321 aaPredicted RBP36.99■■■■□ 3.51
LHX3-201ENST00000371746 POLA1P09884 1462 aaPredicted RBP36.97■■■■□ 3.51
LHX3-201ENST00000371746 PDS5BQ9NTI5 1447 aa36.97■■■■□ 3.51
LHX3-201ENST00000371746 RAD54L2Q9Y4B4 1467 aa36.96■■■■□ 3.51
LHX3-201ENST00000371746 URB2Q14146 1524 aaKnown RBP36.93■■■■□ 3.5
LHX3-201ENST00000371746 VPS8Q8N3P4 1428 aa36.83■■■■□ 3.49
LHX3-201ENST00000371746 ABCA10Q8WWZ4 1543 aa36.82■■■■□ 3.49
LHX3-201ENST00000371746 KIF21AQ7Z4S6 1674 aa36.8■■■■□ 3.48
LHX3-201ENST00000371746 CARMIL1Q5VZK9 1371 aa36.8■■■■□ 3.48
LHX3-201ENST00000371746 ARAP1Q96P48 1450 aa36.67■■■■□ 3.46
LHX3-201ENST00000371746 TDRD9Q8NDG6 1382 aaKnown RBP36.58■■■■□ 3.45
LHX3-201ENST00000371746 WDR97A6NE52 1622 aa36.56■■■■□ 3.44
LHX3-201ENST00000371746 APLP2Q06481 763 aa36.56■■■■□ 3.44
LHX3-201ENST00000371746 ARHGAP35Q9NRY4 1499 aa36.54■■■■□ 3.44
LHX3-201ENST00000371746 MRC2Q9UBG0 1479 aa36.46■■■■□ 3.43
LHX3-201ENST00000371746 ABCA5Q8WWZ7 1642 aa36.45■■■■□ 3.43
LHX3-201ENST00000371746 GAPVD1Q14C86 1478 aa36.44■■■■□ 3.42
LHX3-201ENST00000371746 CUL7Q14999 1698 aa36.42■■■■□ 3.42
LHX3-201ENST00000371746 TARBP1Q13395 1621 aaKnown RBP36.4■■■■□ 3.42
LHX3-201ENST00000371746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.28■■■■□ 3.4
LHX3-201ENST00000371746 ZEB1P37275 1124 aaPredicted RBP36.28■■■■□ 3.4
LHX3-201ENST00000371746 KANK4Q5T7N3 995 aaPredicted RBP36.26■■■■□ 3.39
LHX3-201ENST00000371746 P3H3Q8IVL6 736 aa36.22■■■■□ 3.39
LHX3-201ENST00000371746 AQRO60306 1485 aaKnown RBP eCLIP36.21■■■■□ 3.39
LHX3-201ENST00000371746 ERCC6Q03468 1493 aa36.21■■■■□ 3.39
LHX3-201ENST00000371746 WDR62O43379 1518 aa36.2■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms