Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.02■■□□□ 1.12
NHLRC1Q6VVB1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NHLRC1Q6VVB1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NHLRC1Q6VVB1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC22.01■■□□□ 1.11
NHLRC1Q6VVB1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NHLRC1Q6VVB1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
NHLRC1Q6VVB1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
NHLRC1Q6VVB1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22■■□□□ 1.11
NHLRC1Q6VVB1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22■■□□□ 1.11
NHLRC1Q6VVB1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22■■□□□ 1.11
NHLRC1Q6VVB1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NHLRC1Q6VVB1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.98■■□□□ 1.11
NHLRC1Q6VVB1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.98■■□□□ 1.11
NHLRC1Q6VVB1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.98■■□□□ 1.11
NHLRC1Q6VVB1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
NHLRC1Q6VVB1 AL359258.2-201ENST00000564063 1566 ntBASIC21.98■■□□□ 1.11
NHLRC1Q6VVB1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.97■■□□□ 1.11
NHLRC1Q6VVB1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NHLRC1Q6VVB1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.97■■□□□ 1.11
NHLRC1Q6VVB1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NHLRC1Q6VVB1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NHLRC1Q6VVB1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
NHLRC1Q6VVB1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NHLRC1Q6VVB1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NHLRC1Q6VVB1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.94■■□□□ 1.1
NHLRC1Q6VVB1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
NHLRC1Q6VVB1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 MIR4449-201ENST00000578365 66 ntBASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
NHLRC1Q6VVB1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.91■■□□□ 1.1
NHLRC1Q6VVB1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NHLRC1Q6VVB1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
NHLRC1Q6VVB1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NHLRC1Q6VVB1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
NHLRC1Q6VVB1 AL359504.2-201ENST00000605506 1601 ntBASIC21.88■■□□□ 1.09
NHLRC1Q6VVB1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NHLRC1Q6VVB1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NHLRC1Q6VVB1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.88■■□□□ 1.09
NHLRC1Q6VVB1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NHLRC1Q6VVB1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
NHLRC1Q6VVB1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.87■■□□□ 1.09
NHLRC1Q6VVB1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
NHLRC1Q6VVB1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.87■■□□□ 1.09
NHLRC1Q6VVB1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NHLRC1Q6VVB1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 AC060814.1-201ENST00000554326 538 ntBASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 AC091060.1-201ENST00000623524 1766 ntBASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NHLRC1Q6VVB1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NHLRC1Q6VVB1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NHLRC1Q6VVB1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NHLRC1Q6VVB1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms