Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.03■■□□□ 1.12
SEC61A2Q9H9S3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SEC61A2Q9H9S3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.02■■□□□ 1.12
SEC61A2Q9H9S3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SEC61A2Q9H9S3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SEC61A2Q9H9S3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
SEC61A2Q9H9S3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
SEC61A2Q9H9S3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 AC008813.1-201ENST00000536597 885 ntBASIC22■■□□□ 1.11
SEC61A2Q9H9S3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
SEC61A2Q9H9S3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.99■■□□□ 1.11
SEC61A2Q9H9S3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.98■■□□□ 1.11
SEC61A2Q9H9S3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 AC135731.1-201ENST00000569415 2548 ntBASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 AL449106.1-201ENST00000608517 1980 ntBASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SEC61A2Q9H9S3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.96■■□□□ 1.11
SEC61A2Q9H9S3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
SEC61A2Q9H9S3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SEC61A2Q9H9S3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 WHAMMP3-201ENST00000611636 1609 ntBASIC21.95■■□□□ 1.1
SEC61A2Q9H9S3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SEC61A2Q9H9S3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SEC61A2Q9H9S3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SEC61A2Q9H9S3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SEC61A2Q9H9S3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SEC61A2Q9H9S3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.92■■□□□ 1.1
SEC61A2Q9H9S3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.92■■□□□ 1.1
SEC61A2Q9H9S3 MIR219A2-201ENST00000608502 1504 ntBASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SEC61A2Q9H9S3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 AP004609.3-201ENST00000610705 1884 ntBASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SEC61A2Q9H9S3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.89■■□□□ 1.09
SEC61A2Q9H9S3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SEC61A2Q9H9S3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.89■■□□□ 1.09
SEC61A2Q9H9S3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SEC61A2Q9H9S3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 AC148477.6-201ENST00000623746 465 ntBASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SEC61A2Q9H9S3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SEC61A2Q9H9S3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SEC61A2Q9H9S3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms