Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTX4Q96A99 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.11■□□□□ 0.97
PTX4Q96A99 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTX4Q96A99 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.1■□□□□ 0.97
PTX4Q96A99 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTX4Q96A99 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTX4Q96A99 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.09■□□□□ 0.97
PTX4Q96A99 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.09■□□□□ 0.97
PTX4Q96A99 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.09■□□□□ 0.97
PTX4Q96A99 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.08■□□□□ 0.97
PTX4Q96A99 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTX4Q96A99 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.08■□□□□ 0.97
PTX4Q96A99 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.07■□□□□ 0.96
PTX4Q96A99 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTX4Q96A99 WHAMMP3-201ENST00000611636 1609 ntBASIC21.07■□□□□ 0.96
PTX4Q96A99 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PTX4Q96A99 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTX4Q96A99 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
PTX4Q96A99 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTX4Q96A99 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.06■□□□□ 0.96
PTX4Q96A99 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTX4Q96A99 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTX4Q96A99 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTX4Q96A99 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTX4Q96A99 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTX4Q96A99 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTX4Q96A99 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.04■□□□□ 0.96
PTX4Q96A99 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTX4Q96A99 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTX4Q96A99 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.03■□□□□ 0.96
PTX4Q96A99 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.03■□□□□ 0.96
PTX4Q96A99 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTX4Q96A99 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTX4Q96A99 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTX4Q96A99 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.02■□□□□ 0.95
PTX4Q96A99 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTX4Q96A99 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PTX4Q96A99 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.01■□□□□ 0.95
PTX4Q96A99 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTX4Q96A99 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTX4Q96A99 AC010501.1-201ENST00000606270 1962 ntBASIC21.01■□□□□ 0.95
PTX4Q96A99 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PTX4Q96A99 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PTX4Q96A99 AC110285.7-201ENST00000624417 1536 ntBASIC21■□□□□ 0.95
PTX4Q96A99 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTX4Q96A99 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PTX4Q96A99 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTX4Q96A99 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTX4Q96A99 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.99■□□□□ 0.95
PTX4Q96A99 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
PTX4Q96A99 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.99■□□□□ 0.95
PTX4Q96A99 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTX4Q96A99 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
PTX4Q96A99 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTX4Q96A99 ERN1-208ENST00000606895 2068 ntBASIC20.98■□□□□ 0.95
PTX4Q96A99 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTX4Q96A99 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.98■□□□□ 0.95
PTX4Q96A99 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTX4Q96A99 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PTX4Q96A99 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTX4Q96A99 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
PTX4Q96A99 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTX4Q96A99 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTX4Q96A99 DUX4L28-201ENST00000623687 678 ntBASIC20.97■□□□□ 0.95
PTX4Q96A99 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTX4Q96A99 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTX4Q96A99 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTX4Q96A99 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTX4Q96A99 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTX4Q96A99 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC20.96■□□□□ 0.95
PTX4Q96A99 MIR3665-201ENST00000578708 105 ntBASIC20.96■□□□□ 0.95
PTX4Q96A99 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTX4Q96A99 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTX4Q96A99 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTX4Q96A99 AC142381.3-201ENST00000568208 1670 ntBASIC20.96■□□□□ 0.95
PTX4Q96A99 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.96■□□□□ 0.95
PTX4Q96A99 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
PTX4Q96A99 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTX4Q96A99 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.95■□□□□ 0.94
PTX4Q96A99 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.95■□□□□ 0.94
PTX4Q96A99 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTX4Q96A99 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTX4Q96A99 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTX4Q96A99 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTX4Q96A99 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTX4Q96A99 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PTX4Q96A99 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTX4Q96A99 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTX4Q96A99 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTX4Q96A99 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms