Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CNOT4O95628 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CNOT4O95628 WHAMMP3-201ENST00000611636 1609 ntBASIC21.87■■□□□ 1.09
CNOT4O95628 AC142086.6-201ENST00000621154 1765 ntBASIC21.87■■□□□ 1.09
CNOT4O95628 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.86■■□□□ 1.09
CNOT4O95628 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CNOT4O95628 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CNOT4O95628 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CNOT4O95628 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.85■■□□□ 1.09
CNOT4O95628 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CNOT4O95628 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.85■■□□□ 1.09
CNOT4O95628 AL157400.5-201ENST00000507624 621 ntBASIC21.85■■□□□ 1.09
CNOT4O95628 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CNOT4O95628 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CNOT4O95628 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CNOT4O95628 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CNOT4O95628 BX255925.1-201ENST00000566954 1854 ntBASIC21.83■■□□□ 1.09
CNOT4O95628 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.83■■□□□ 1.09
CNOT4O95628 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.83■■□□□ 1.09
CNOT4O95628 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CNOT4O95628 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.83■■□□□ 1.09
CNOT4O95628 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CNOT4O95628 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CNOT4O95628 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CNOT4O95628 NTF6A-201ENST00000591175 560 ntBASIC21.82■■□□□ 1.08
CNOT4O95628 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CNOT4O95628 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CNOT4O95628 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CNOT4O95628 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CNOT4O95628 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CNOT4O95628 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.81■■□□□ 1.08
CNOT4O95628 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CNOT4O95628 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CNOT4O95628 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.81■■□□□ 1.08
CNOT4O95628 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.81■■□□□ 1.08
CNOT4O95628 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CNOT4O95628 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.8■■□□□ 1.08
CNOT4O95628 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CNOT4O95628 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.8■■□□□ 1.08
CNOT4O95628 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.8■■□□□ 1.08
CNOT4O95628 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CNOT4O95628 AC012354.3-201ENST00000623734 483 ntBASIC21.8■■□□□ 1.08
CNOT4O95628 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CNOT4O95628 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CNOT4O95628 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CNOT4O95628 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.79■■□□□ 1.08
CNOT4O95628 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CNOT4O95628 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.79■■□□□ 1.08
CNOT4O95628 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CNOT4O95628 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.79■■□□□ 1.08
CNOT4O95628 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.79■■□□□ 1.08
CNOT4O95628 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.78■■□□□ 1.08
CNOT4O95628 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CNOT4O95628 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CNOT4O95628 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.78■■□□□ 1.08
CNOT4O95628 AC025884.2-201ENST00000553429 711 ntBASIC21.78■■□□□ 1.08
CNOT4O95628 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CNOT4O95628 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CNOT4O95628 SMPD5-203ENST00000639008 1464 ntBASIC21.77■■□□□ 1.08
CNOT4O95628 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CNOT4O95628 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CNOT4O95628 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CNOT4O95628 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.77■■□□□ 1.08
CNOT4O95628 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.77■■□□□ 1.07
CNOT4O95628 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CNOT4O95628 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CNOT4O95628 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.76■■□□□ 1.07
CNOT4O95628 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.76■■□□□ 1.07
CNOT4O95628 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CNOT4O95628 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.76■■□□□ 1.07
CNOT4O95628 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CNOT4O95628 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.76■■□□□ 1.07
CNOT4O95628 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CNOT4O95628 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CNOT4O95628 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CNOT4O95628 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CNOT4O95628 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CNOT4O95628 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CNOT4O95628 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.75■■□□□ 1.07
CNOT4O95628 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CNOT4O95628 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.74■■□□□ 1.07
CNOT4O95628 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CNOT4O95628 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.74■■□□□ 1.07
CNOT4O95628 AC007029.1-201ENST00000604183 313 ntBASIC21.74■■□□□ 1.07
CNOT4O95628 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CNOT4O95628 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CNOT4O95628 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CNOT4O95628 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CNOT4O95628 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CNOT4O95628 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CNOT4O95628 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CNOT4O95628 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CNOT4O95628 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CNOT4O95628 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.71■■□□□ 1.07
CNOT4O95628 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.71■■□□□ 1.07
CNOT4O95628 MIR3960-201ENST00000583311 91 ntBASIC21.71■■□□□ 1.07
CNOT4O95628 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.71■■□□□ 1.07
CNOT4O95628 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CNOT4O95628 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CNOT4O95628 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms