Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGN4O00479 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGN4O00479 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGN4O00479 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.02■■□□□ 1.28
HMGN4O00479 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HMGN4O00479 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.02■■□□□ 1.28
HMGN4O00479 AC145676.1-201ENST00000514988 2004 ntBASIC23.02■■□□□ 1.28
HMGN4O00479 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.02■■□□□ 1.28
HMGN4O00479 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGN4O00479 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGN4O00479 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGN4O00479 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGN4O00479 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGN4O00479 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HMGN4O00479 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
HMGN4O00479 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23■■□□□ 1.27
HMGN4O00479 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGN4O00479 AC008813.1-201ENST00000536597 885 ntBASIC23■■□□□ 1.27
HMGN4O00479 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
HMGN4O00479 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGN4O00479 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 AC092803.2-201ENST00000564287 1899 ntBASIC22.98■■□□□ 1.27
HMGN4O00479 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.98■■□□□ 1.27
HMGN4O00479 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGN4O00479 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.98■■□□□ 1.27
HMGN4O00479 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGN4O00479 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGN4O00479 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGN4O00479 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
HMGN4O00479 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGN4O00479 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.97■■□□□ 1.27
HMGN4O00479 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGN4O00479 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGN4O00479 MIR219A2-201ENST00000608502 1504 ntBASIC22.97■■□□□ 1.27
HMGN4O00479 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGN4O00479 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGN4O00479 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
HMGN4O00479 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGN4O00479 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22.96■■□□□ 1.27
HMGN4O00479 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGN4O00479 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGN4O00479 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGN4O00479 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGN4O00479 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGN4O00479 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
HMGN4O00479 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
HMGN4O00479 AC148477.6-201ENST00000623746 465 ntBASIC22.95■■□□□ 1.26
HMGN4O00479 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
HMGN4O00479 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
HMGN4O00479 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
HMGN4O00479 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.93■■□□□ 1.26
HMGN4O00479 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HMGN4O00479 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.93■■□□□ 1.26
HMGN4O00479 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HMGN4O00479 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HMGN4O00479 DUSP8P4-201ENST00000399538 1761 ntBASIC22.93■■□□□ 1.26
HMGN4O00479 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.92■■□□□ 1.26
HMGN4O00479 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
HMGN4O00479 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
HMGN4O00479 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HMGN4O00479 HLA-V-202ENST00000446817 847 ntBASIC22.92■■□□□ 1.26
HMGN4O00479 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.92■■□□□ 1.26
HMGN4O00479 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.91■■□□□ 1.26
HMGN4O00479 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 ABHD17AP4-201ENST00000411545 909 ntBASIC22.91■■□□□ 1.26
HMGN4O00479 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.91■■□□□ 1.26
HMGN4O00479 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.91■■□□□ 1.26
HMGN4O00479 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.91■■□□□ 1.26
HMGN4O00479 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HMGN4O00479 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGN4O00479 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGN4O00479 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGN4O00479 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGN4O00479 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.9■■□□□ 1.26
HMGN4O00479 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.9■■□□□ 1.26
HMGN4O00479 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.9■■□□□ 1.26
HMGN4O00479 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.9■■□□□ 1.26
HMGN4O00479 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HMGN4O00479 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms