Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
NKX3-1Q99801 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.6■■□□□ 1.05
NKX3-1Q99801 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
NKX3-1Q99801 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.6■■□□□ 1.05
NKX3-1Q99801 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX3-1Q99801 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.59■■□□□ 1.05
NKX3-1Q99801 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
NKX3-1Q99801 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.59■■□□□ 1.05
NKX3-1Q99801 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX3-1Q99801 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NKX3-1Q99801 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NKX3-1Q99801 LINC00273-201ENST00000539813 1452 ntBASIC21.58■■□□□ 1.05
NKX3-1Q99801 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
NKX3-1Q99801 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.58■■□□□ 1.05
NKX3-1Q99801 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
NKX3-1Q99801 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.04
NKX3-1Q99801 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NKX3-1Q99801 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.58■■□□□ 1.04
NKX3-1Q99801 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NKX3-1Q99801 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.57■■□□□ 1.04
NKX3-1Q99801 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX3-1Q99801 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.57■■□□□ 1.04
NKX3-1Q99801 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.57■■□□□ 1.04
NKX3-1Q99801 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX3-1Q99801 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.57■■□□□ 1.04
NKX3-1Q99801 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
NKX3-1Q99801 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
NKX3-1Q99801 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NKX3-1Q99801 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX3-1Q99801 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX3-1Q99801 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX3-1Q99801 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX3-1Q99801 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX3-1Q99801 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX3-1Q99801 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX3-1Q99801 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX3-1Q99801 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.54■■□□□ 1.04
NKX3-1Q99801 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX3-1Q99801 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX3-1Q99801 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.52■■□□□ 1.04
NKX3-1Q99801 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
NKX3-1Q99801 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.52■■□□□ 1.03
NKX3-1Q99801 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NKX3-1Q99801 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NKX3-1Q99801 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
NKX3-1Q99801 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.5■■□□□ 1.03
NKX3-1Q99801 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.5■■□□□ 1.03
NKX3-1Q99801 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
NKX3-1Q99801 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NKX3-1Q99801 AC020928.2-201ENST00000588717 2197 ntBASIC21.49■■□□□ 1.03
NKX3-1Q99801 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.49■■□□□ 1.03
NKX3-1Q99801 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.48■■□□□ 1.03
NKX3-1Q99801 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.48■■□□□ 1.03
NKX3-1Q99801 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NKX3-1Q99801 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.46■■□□□ 1.03
NKX3-1Q99801 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NKX3-1Q99801 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.46■■□□□ 1.03
NKX3-1Q99801 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NKX3-1Q99801 AC087741.3-201ENST00000624270 1347 ntBASIC21.46■■□□□ 1.03
NKX3-1Q99801 AP004609.3-201ENST00000610705 1884 ntBASIC21.45■■□□□ 1.02
NKX3-1Q99801 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.45■■□□□ 1.02
NKX3-1Q99801 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
NKX3-1Q99801 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NKX3-1Q99801 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX3-1Q99801 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.45■■□□□ 1.02
NKX3-1Q99801 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX3-1Q99801 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX3-1Q99801 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX3-1Q99801 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NKX3-1Q99801 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NKX3-1Q99801 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.44■■□□□ 1.02
NKX3-1Q99801 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NKX3-1Q99801 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NKX3-1Q99801 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.44■■□□□ 1.02
NKX3-1Q99801 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.44■■□□□ 1.02
NKX3-1Q99801 AC044849.2-201ENST00000606596 710 ntBASIC21.44■■□□□ 1.02
NKX3-1Q99801 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.43■■□□□ 1.02
NKX3-1Q99801 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 AC145676.1-201ENST00000514988 2004 ntBASIC21.43■■□□□ 1.02
NKX3-1Q99801 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
NKX3-1Q99801 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.43■■□□□ 1.02
NKX3-1Q99801 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.43■■□□□ 1.02
NKX3-1Q99801 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX3-1Q99801 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NKX3-1Q99801 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX3-1Q99801 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NKX3-1Q99801 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.41■■□□□ 1.02
NKX3-1Q99801 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NKX3-1Q99801 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX3-1Q99801 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NKX3-1Q99801 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX3-1Q99801 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.4■■□□□ 1.02
NKX3-1Q99801 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.4■■□□□ 1.02
NKX3-1Q99801 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX3-1Q99801 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX3-1Q99801 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms