Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
SCN1AP35498 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.91■■□□□ 1.9
SCN1AP35498 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.91■■□□□ 1.9
SCN1AP35498 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SCN1AP35498 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SCN1AP35498 AC092296.2-201ENST00000589470 999 ntBASIC26.9■■□□□ 1.9
SCN1AP35498 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
SCN1AP35498 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SCN1AP35498 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SCN1AP35498 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SCN1AP35498 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.89■■□□□ 1.9
SCN1AP35498 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
SCN1AP35498 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
SCN1AP35498 AC022413.1-201ENST00000624602 984 ntBASIC26.89■■□□□ 1.9
SCN1AP35498 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SCN1AP35498 LINC01003-201ENST00000564834 1764 ntBASIC26.89■■□□□ 1.89
SCN1AP35498 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.89■■□□□ 1.89
SCN1AP35498 AL157400.5-201ENST00000507624 621 ntBASIC26.87■■□□□ 1.89
SCN1AP35498 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SCN1AP35498 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
SCN1AP35498 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SCN1AP35498 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.85■■□□□ 1.89
SCN1AP35498 RARRES2P2-201ENST00000394842 485 ntBASIC26.85■■□□□ 1.89
SCN1AP35498 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.85■■□□□ 1.89
SCN1AP35498 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SCN1AP35498 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.85■■□□□ 1.89
SCN1AP35498 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.85■■□□□ 1.89
SCN1AP35498 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SCN1AP35498 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SCN1AP35498 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
SCN1AP35498 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
SCN1AP35498 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
SCN1AP35498 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SCN1AP35498 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SCN1AP35498 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.83■■□□□ 1.89
SCN1AP35498 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
SCN1AP35498 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SCN1AP35498 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SCN1AP35498 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.82■■□□□ 1.88
SCN1AP35498 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SCN1AP35498 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
SCN1AP35498 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.8■■□□□ 1.88
SCN1AP35498 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SCN1AP35498 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SCN1AP35498 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
SCN1AP35498 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.78■■□□□ 1.88
SCN1AP35498 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SCN1AP35498 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SCN1AP35498 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.77■■□□□ 1.88
SCN1AP35498 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
SCN1AP35498 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SCN1AP35498 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SCN1AP35498 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.76■■□□□ 1.87
SCN1AP35498 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.76■■□□□ 1.87
SCN1AP35498 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.76■■□□□ 1.87
SCN1AP35498 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.75■■□□□ 1.87
SCN1AP35498 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
SCN1AP35498 WHAMMP3-201ENST00000611636 1609 ntBASIC26.75■■□□□ 1.87
SCN1AP35498 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
SCN1AP35498 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
SCN1AP35498 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SCN1AP35498 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
SCN1AP35498 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
SCN1AP35498 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.74■■□□□ 1.87
SCN1AP35498 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SCN1AP35498 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.73■■□□□ 1.87
SCN1AP35498 RNF126P1-201ENST00000567452 1320 ntBASIC26.73■■□□□ 1.87
SCN1AP35498 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
SCN1AP35498 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SCN1AP35498 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SCN1AP35498 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.72■■□□□ 1.87
SCN1AP35498 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
SCN1AP35498 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SCN1AP35498 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SCN1AP35498 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SCN1AP35498 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.71■■□□□ 1.87
SCN1AP35498 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SCN1AP35498 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
SCN1AP35498 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.7■■□□□ 1.87
SCN1AP35498 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SCN1AP35498 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.7■■□□□ 1.86
SCN1AP35498 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.7■■□□□ 1.86
SCN1AP35498 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SCN1AP35498 AC025884.2-201ENST00000553429 711 ntBASIC26.69■■□□□ 1.86
SCN1AP35498 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SCN1AP35498 ABHD17AP5-201ENST00000580133 923 ntBASIC26.68■■□□□ 1.86
SCN1AP35498 AL359258.2-201ENST00000564063 1566 ntBASIC26.68■■□□□ 1.86
SCN1AP35498 BX255925.1-201ENST00000566954 1854 ntBASIC26.68■■□□□ 1.86
SCN1AP35498 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
SCN1AP35498 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SCN1AP35498 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.68■■□□□ 1.86
SCN1AP35498 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SCN1AP35498 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SCN1AP35498 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms