Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV40A0A0B4J280 AL359258.2-201ENST00000564063 1566 ntBASIC20.39■□□□□ 0.85
TRAV40A0A0B4J280 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 AC012354.3-201ENST00000623734 483 ntBASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 U85056.1-201ENST00000616429 682 ntBASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV40A0A0B4J280 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 AC007029.1-201ENST00000604183 313 ntBASIC20.29■□□□□ 0.84
TRAV40A0A0B4J280 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 AC018358.1-201ENST00000631079 1402 ntBASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 AC139426.1-201ENST00000568218 2529 ntBASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 SMPD5-203ENST00000639008 1464 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 KRT18P60-201ENST00000312876 1297 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 AL033527.3-201ENST00000566366 1196 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAV40A0A0B4J280 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV40A0A0B4J280 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 228.5 ms