Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV40A0A0B4J280 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
TRAV40A0A0B4J280 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV40A0A0B4J280 AL359258.2-201ENST00000564063 1566 ntBASIC20.39■□□□□ 0.85
TRAV40A0A0B4J280 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV40A0A0B4J280 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV40A0A0B4J280 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 AC012354.3-201ENST00000623734 483 ntBASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV40A0A0B4J280 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 U85056.1-201ENST00000616429 682 ntBASIC20.35■□□□□ 0.85
TRAV40A0A0B4J280 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV40A0A0B4J280 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
TRAV40A0A0B4J280 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV40A0A0B4J280 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV40A0A0B4J280 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV40A0A0B4J280 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV40A0A0B4J280 AC007029.1-201ENST00000604183 313 ntBASIC20.29■□□□□ 0.84
TRAV40A0A0B4J280 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 AC018358.1-201ENST00000631079 1402 ntBASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 AC139426.1-201ENST00000568218 2529 ntBASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV40A0A0B4J280 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV40A0A0B4J280 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAV40A0A0B4J280 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV40A0A0B4J280 SMPD5-203ENST00000639008 1464 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 KRT18P60-201ENST00000312876 1297 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 AL033527.3-201ENST00000566366 1196 ntBASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV40A0A0B4J280 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV40A0A0B4J280 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV40A0A0B4J280 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAV40A0A0B4J280 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV40A0A0B4J280 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms