Protein–RNA interactions for Protein: P0C0E4

RAB40AL, Ras-related protein Rab-40A-like, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40ALP0C0E4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RAB40ALP0C0E4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RAB40ALP0C0E4 NTF6A-201ENST00000591175 560 ntBASIC23.79■■□□□ 1.4
RAB40ALP0C0E4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RAB40ALP0C0E4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.78■■□□□ 1.4
RAB40ALP0C0E4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RAB40ALP0C0E4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RAB40ALP0C0E4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAB40ALP0C0E4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAB40ALP0C0E4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RAB40ALP0C0E4 AC092296.2-201ENST00000589470 999 ntBASIC23.76■■□□□ 1.39
RAB40ALP0C0E4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
RAB40ALP0C0E4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RAB40ALP0C0E4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RAB40ALP0C0E4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
RAB40ALP0C0E4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
RAB40ALP0C0E4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.74■■□□□ 1.39
RAB40ALP0C0E4 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RAB40ALP0C0E4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.73■■□□□ 1.39
RAB40ALP0C0E4 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
RAB40ALP0C0E4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.72■■□□□ 1.39
RAB40ALP0C0E4 ECEL1P2-201ENST00000461596 1295 ntBASIC23.72■■□□□ 1.39
RAB40ALP0C0E4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.72■■□□□ 1.39
RAB40ALP0C0E4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 AC100797.4-201ENST00000631653 1827 ntBASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
RAB40ALP0C0E4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RAB40ALP0C0E4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RAB40ALP0C0E4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.7■■□□□ 1.38
RAB40ALP0C0E4 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.7■■□□□ 1.38
RAB40ALP0C0E4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.69■■□□□ 1.38
RAB40ALP0C0E4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 AC012354.3-201ENST00000623734 483 ntBASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RAB40ALP0C0E4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RAB40ALP0C0E4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
RAB40ALP0C0E4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
RAB40ALP0C0E4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RAB40ALP0C0E4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.65■■□□□ 1.38
RAB40ALP0C0E4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RAB40ALP0C0E4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
RAB40ALP0C0E4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RAB40ALP0C0E4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.64■■□□□ 1.37
RAB40ALP0C0E4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.64■■□□□ 1.37
RAB40ALP0C0E4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RAB40ALP0C0E4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 U85056.1-201ENST00000616429 682 ntBASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RAB40ALP0C0E4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.62■■□□□ 1.37
RAB40ALP0C0E4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.62■■□□□ 1.37
RAB40ALP0C0E4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RAB40ALP0C0E4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RAB40ALP0C0E4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAB40ALP0C0E4 AL139393.2-201ENST00000608721 2025 ntBASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 AL157400.5-201ENST00000507624 621 ntBASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAB40ALP0C0E4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAB40ALP0C0E4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAB40ALP0C0E4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
RAB40ALP0C0E4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAB40ALP0C0E4 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms