RNA–Protein interactions for RNA: YPR108W

RPN7, Transcript of Essential non-ATPase regulatory subunit of the 26S proteasome, yeastyeast

Gene RPN7, Length 1,290 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN7YPR108W FAP1P53971 965 aa13.61□□□□□ -0.23
RPN7YPR108W PRY3P47033 881 aa12.9□□□□□ -0.34
RPN7YPR108W MTC1P47018 478 aaKnown RBP12.78□□□□□ -0.36
RPN7YPR108W YCK3P39962 524 aa12.22□□□□□ -0.45
RPN7YPR108W AAD16Q02895 342 aa11.96□□□□□ -0.49
RPN7YPR108W HAA1Q12753 694 aaKnown RBP11.9□□□□□ -0.5
RPN7YPR108W PRI1P10363 409 aa11.82□□□□□ -0.52
RPN7YPR108W DRS1P32892 752 aaKnown RBP11.37□□□□□ -0.59
RPN7YPR108W TSR3Q12094 313 aaKnown RBP11.12□□□□□ -0.63
RPN7YPR108W RPG1P38249 964 aaKnown RBP10.95□□□□□ -0.66
RPN7YPR108W ISW2Q08773 1120 aa10.94□□□□□ -0.66
RPN7YPR108W YGL015CP33199 130 aa10.64□□□□□ -0.71
RPN7YPR108W BUD31P25337 157 aaPredicted RBP10.63□□□□□ -0.71
RPN7YPR108W MRPL32P25348 183 aa10.59□□□□□ -0.71
RPN7YPR108W SIS1P25294 352 aaKnown RBP9.92□□□□□ -0.82
RPN7YPR108W DIP2Q12220 943 aaPredicted RBP9.89□□□□□ -0.83
RPN7YPR108W SGS1P35187 1447 aa9.86□□□□□ -0.83
RPN7YPR108W CDC27P38042 758 aa9.85□□□□□ -0.83
RPN7YPR108W INO80P53115 1489 aa9.77□□□□□ -0.85
RPN7YPR108W MAP2P38174 421 aaKnown RBP9.73□□□□□ -0.85
RPN7YPR108W UBP10P53874 792 aaPredicted RBP9.69□□□□□ -0.86
RPN7YPR108W RSE1Q04693 1361 aaKnown RBP9.68□□□□□ -0.86
RPN7YPR108W REB1P21538 810 aa9.63□□□□□ -0.87
RPN7YPR108W AVT3P36062 692 aa9.59□□□□□ -0.87
RPN7YPR108W TCB3Q03640 1545 aaKnown RBP9.56□□□□□ -0.88
RPN7YPR108W BFR2Q06631 534 aaKnown RBP9.55□□□□□ -0.88
RPN7YPR108W RPL17AP05740 184 aaKnown RBP9.54□□□□□ -0.88
RPN7YPR108W RPL17BP46990 184 aaKnown RBP9.54□□□□□ -0.88
RPN7YPR108W UBP9P39967 754 aa9.52□□□□□ -0.89
RPN7YPR108W SPA2P23201 1466 aaKnown RBP9.5□□□□□ -0.89
RPN7YPR108W YKR023WP36119 530 aaKnown RBP9.35□□□□□ -0.91
RPN7YPR108W SSN2P38931 1420 aa9.35□□□□□ -0.91
RPN7YPR108W TIF4632P39936 914 aaKnown RBP9.27□□□□□ -0.93
RPN7YPR108W TGL3P40308 642 aa9.27□□□□□ -0.93
RPN7YPR108W DCD1P06773 312 aa9.25□□□□□ -0.93
RPN7YPR108W SCY1P53009 804 aa9.19□□□□□ -0.94
RPN7YPR108W TY1B-DR4Q07793 1604 aa9.19□□□□□ -0.94
RPN7YPR108W HOP09932 586 aa9.18□□□□□ -0.94
RPN7YPR108W MON2P48563 1636 aaPredicted RBP9.16□□□□□ -0.94
RPN7YPR108W SPT6P23615 1451 aaKnown RBP9.15□□□□□ -0.95
RPN7YPR108W TFC8Q12308 588 aa9.13□□□□□ -0.95
RPN7YPR108W SLX5P32828 619 aaKnown RBP9.12□□□□□ -0.95
RPN7YPR108W HSL1P34244 1518 aa9.07□□□□□ -0.96
RPN7YPR108W SPT21P35209 758 aa9.03□□□□□ -0.96
RPN7YPR108W SWR1Q05471 1514 aa9.01□□□□□ -0.97
RPN7YPR108W TFA1P36100 482 aa8.99□□□□□ -0.97
RPN7YPR108W XRN1P22147 1528 aaKnown RBP8.95□□□□□ -0.98
RPN7YPR108W HIR3P47171 1648 aa8.94□□□□□ -0.98
RPN7YPR108W YBL029C-AQ3E756 94 aa8.93□□□□□ -0.98
RPN7YPR108W KOG1P38873 1557 aa8.89□□□□□ -0.99
RPN7YPR108W THO2P53552 1597 aaKnown RBP8.83□□□□□ -1
RPN7YPR108W REV3P14284 1504 aa8.79□□□□□ -1
RPN7YPR108W TAF2P23255 1407 aa8.79□□□□□ -1
RPN7YPR108W BCH2P36122 765 aa8.77□□□□□ -1.01
RPN7YPR108W BUD4P47136 1447 aa8.76□□□□□ -1.01
RPN7YPR108W SIN3P22579 1536 aa8.75□□□□□ -1.01
RPN7YPR108W DNA2P38859 1522 aa8.75□□□□□ -1.01
RPN7YPR108W MYO2P19524 1574 aaKnown RBP8.73□□□□□ -1.01
RPN7YPR108W TAF7Q05021 590 aa8.7□□□□□ -1.02
RPN7YPR108W MST1P07236 462 aa8.69□□□□□ -1.02
RPN7YPR108W VNX1P42839 908 aa8.69□□□□□ -1.02
RPN7YPR108W YTA7P40340 1379 aa8.69□□□□□ -1.02
RPN7YPR108W ECM5Q03214 1411 aa8.69□□□□□ -1.02
RPN7YPR108W SSK2P53599 1579 aa8.66□□□□□ -1.02
RPN7YPR108W SKI3P17883 1432 aaKnown RBP8.66□□□□□ -1.02
RPN7YPR108W AIR2Q12476 344 aaKnown RBP8.66□□□□□ -1.02
RPN7YPR108W SPP1Q03012 353 aa8.6□□□□□ -1.03
RPN7YPR108W ESP1Q03018 1630 aa8.6□□□□□ -1.03
RPN7YPR108W CHD1P32657 1468 aa8.59□□□□□ -1.03
RPN7YPR108W YJL171CP46992 396 aa8.59□□□□□ -1.03
RPN7YPR108W YPK9Q12697 1472 aa8.57□□□□□ -1.04
RPN7YPR108W FKH1P40466 484 aa8.56□□□□□ -1.04
RPN7YPR108W YOR238WQ08634 303 aa8.55□□□□□ -1.04
RPN7YPR108W POL1P13382 1468 aa8.53□□□□□ -1.04
RPN7YPR108W RIM101P33400 625 aa8.53□□□□□ -1.04
RPN7YPR108W STU1P38198 1513 aa8.51□□□□□ -1.05
RPN7YPR108W SAS10Q12136 610 aaPredicted RBP8.5□□□□□ -1.05
RPN7YPR108W ATG2P53855 1592 aa8.49□□□□□ -1.05
RPN7YPR108W WSC3Q12215 556 aa8.49□□□□□ -1.05
RPN7YPR108W MDS3P53094 1487 aa8.49□□□□□ -1.05
RPN7YPR108W MMS22Q06164 1454 aa8.46□□□□□ -1.05
RPN7YPR108W TOP2P06786 1428 aaKnown RBP8.45□□□□□ -1.06
RPN7YPR108W MYO4P32492 1471 aa8.44□□□□□ -1.06
RPN7YPR108W SMC4Q12267 1418 aa8.43□□□□□ -1.06
RPN7YPR108W BDF1P35817 686 aa8.42□□□□□ -1.06
RPN7YPR108W RPO31P04051 1460 aa8.42□□□□□ -1.06
RPN7YPR108W YOR1P53049 1477 aa8.41□□□□□ -1.06
RPN7YPR108W STH1P32597 1359 aa8.41□□□□□ -1.06
RPN7YPR108W EPS1P40557 701 aa8.41□□□□□ -1.06
RPN7YPR108W RQC2Q12532 1038 aaKnown RBP8.41□□□□□ -1.06
RPN7YPR108W PEP1P32319 1579 aa8.4□□□□□ -1.06
RPN7YPR108W RKR1Q04781 1562 aa8.4□□□□□ -1.06
RPN7YPR108W SCC2Q04002 1493 aa8.4□□□□□ -1.06
RPN7YPR108W UFD4P33202 1483 aa8.39□□□□□ -1.07
RPN7YPR108W TIF11P38912 153 aaKnown RBP8.37□□□□□ -1.07
RPN7YPR108W BMT6Q12291 365 aa8.34□□□□□ -1.07
RPN7YPR108W RTT106P40161 455 aa8.33□□□□□ -1.08
RPN7YPR108W NSR1P27476 414 aaKnown RBP RIP-Chip data8.31□□□□□ -1.08not detected
RPN7YPR108W LDB19Q12502 818 aa8.3□□□□□ -1.08
RPN7YPR108W BPT1P14772 1559 aa8.3□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms