Protein–RNA interactions for Protein: P33400

RIM101, pH-response transcription factor pacC/RIM101, yeastyeast

Predictions only

Length 625 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RIM101P33400 YGR139WYGR139W 339 nt19.7■□□□□ 0.74
RIM101P33400 YML009W-BYML009W-B 477 nt19.17■□□□□ 0.66
RIM101P33400 MOT3YMR070W 1473 nt19.08■□□□□ 0.64
RIM101P33400 Q0182Q0182 405 nt18.94■□□□□ 0.62
RIM101P33400 NSR1YGR159C 1245 nt18.78■□□□□ 0.6
RIM101P33400 NOP1YDL014W 984 nt18.77■□□□□ 0.6
RIM101P33400 NME1NME1 340 nt18.3■□□□□ 0.52
RIM101P33400 CSM2YIL132C 642 nt17.75■□□□□ 0.43
RIM101P33400 MDJ1YFL016C 1536 nt17.72■□□□□ 0.43
RIM101P33400 YKL036CYKL036C 393 nt17.63■□□□□ 0.41
RIM101P33400 PAU21YOR394W 495 nt17.48■□□□□ 0.39
RIM101P33400 PAU22YPL282C 495 nt17.48■□□□□ 0.39
RIM101P33400 ARO7YPR060C 771 nt17.3■□□□□ 0.36
RIM101P33400 PAM17YKR065C 594 nt17.08■□□□□ 0.32
RIM101P33400 VAR1Q0140 1197 nt16.95■□□□□ 0.3
RIM101P33400 REG2YBR050C 1017 nt16.87■□□□□ 0.29
RIM101P33400 YDR509WYDR509W 348 nt16.84■□□□□ 0.29
RIM101P33400 BUR6YER159C 429 nt16.6■□□□□ 0.25
RIM101P33400 SSA3YBL075C 1950 nt16.55■□□□□ 0.24
RIM101P33400 YJL027CYJL027C 417 nt16.55■□□□□ 0.24
RIM101P33400 BMT5YIL096C 1011 nt16.53■□□□□ 0.24
RIM101P33400 Q0297Q0297 156 nt16.5■□□□□ 0.23
RIM101P33400 Q0010Q0010 387 nt16.42■□□□□ 0.22
RIM101P33400 SRX1YKL086W 384 nt16.38■□□□□ 0.21
RIM101P33400 Q0144Q0144 330 nt16.3■□□□□ 0.2
RIM101P33400 YIR018C-AYIR018C-A 138 nt16.22■□□□□ 0.19
RIM101P33400 SCS3YGL126W 1143 nt16.2■□□□□ 0.18
RIM101P33400 SEM1YDR363W-A 270 nt16.19■□□□□ 0.18
RIM101P33400 SRN2YLR119W 642 nt16.15■□□□□ 0.18
RIM101P33400 ARA2YMR041C 1008 nt16.08■□□□□ 0.16
RIM101P33400 YEL009C-AYEL009C-A 408 nt15.85■□□□□ 0.13
RIM101P33400 YLR122CYLR122C 378 nt15.8■□□□□ 0.12
RIM101P33400 ARP10YDR106W 855 nt15.72■□□□□ 0.11
RIM101P33400 ABZ2YMR289W 1125 nt15.68■□□□□ 0.1
RIM101P33400 YCR099CYCR099C 468 nt15.63■□□□□ 0.09
RIM101P33400 YCR051WYCR051W 669 nt15.62■□□□□ 0.09
RIM101P33400 MET8YBR213W 825 nt15.59■□□□□ 0.09
RIM101P33400 AI3Q0060 1248 nt15.56■□□□□ 0.08
RIM101P33400 Q0142Q0142 177 nt15.56■□□□□ 0.08
RIM101P33400 CLB6YGR109C 1143 nt15.49■□□□□ 0.07
RIM101P33400 TOM20YGR082W 552 nt15.46■□□□□ 0.07
RIM101P33400 PET20YPL159C 762 nt15.45■□□□□ 0.06
RIM101P33400 UTP6YDR449C 1323 nt15.42■□□□□ 0.06
RIM101P33400 DBP2YNL112W 1641 nt15.37■□□□□ 0.05
RIM101P33400 YBR190WYBR190W 312 nt15.34■□□□□ 0.05
RIM101P33400 Q0017Q0017 162 nt15.3■□□□□ 0.04
RIM101P33400 AI5_BETAQ0075 1065 nt15.26■□□□□ 0.03
RIM101P33400 SKG1YKR100C 1068 nt15.26■□□□□ 0.03
RIM101P33400 snR78snR78 87 nt15.24■□□□□ 0.03
RIM101P33400 LCP5YER127W 1074 nt15.24■□□□□ 0.03
RIM101P33400 YOL085CYOL085C 342 nt15.24■□□□□ 0.03
RIM101P33400 Q0255Q0255 1419 nt15.22■□□□□ 0.03
RIM101P33400 URH1YDR400W 1023 nt15.18■□□□□ 0.02
RIM101P33400 HMT1YBR034C 1047 nt15.16■□□□□ 0.02
RIM101P33400 YNR068CYNR068C 819 nt15.11■□□□□ 0.01
RIM101P33400 YOR169CYOR169C 465 nt15.06■□□□□ 0
RIM101P33400 YPL071CYPL071C 471 nt15.04■□□□□ -0
RIM101P33400 YGL188CYGL188C 174 nt15.02■□□□□ -0
RIM101P33400 PKP1YIL042C 1185 nt15□□□□□ -0.01
RIM101P33400 YPL168WYPL168W 1293 nt14.99□□□□□ -0.01
RIM101P33400 ATP6Q0085 780 nt14.92□□□□□ -0.02
RIM101P33400 AIR1YIL079C 1083 nt14.9□□□□□ -0.02
RIM101P33400 PUT4YOR348C 1884 nt14.86□□□□□ -0.03
RIM101P33400 RTC3YHR087W 336 nt14.85□□□□□ -0.03
RIM101P33400 RPP1BYDL130W 321 nt14.82□□□□□ -0.04
RIM101P33400 YHM2YMR241W 945 nt14.81□□□□□ -0.04
RIM101P33400 URE2YNL229C 1065 nt14.8□□□□□ -0.04
RIM101P33400 YJL118WYJL118W 660 nt14.79□□□□□ -0.04
RIM101P33400 YNL067W-AYNL067W-A 147 nt14.79□□□□□ -0.04
RIM101P33400 SCJ1YMR214W 1134 nt14.77□□□□□ -0.05
RIM101P33400 YMR057CYMR057C 372 nt14.73□□□□□ -0.05
RIM101P33400 KTR3YBR205W 1215 nt14.68□□□□□ -0.06
RIM101P33400 NEM1YHR004C 1341 nt14.6□□□□□ -0.07
RIM101P33400 TRN1tP(UGG)A 72 nt14.59□□□□□ -0.07
RIM101P33400 SUF9tP(UGG)F 72 nt14.59□□□□□ -0.07
RIM101P33400 SUF8tP(UGG)H 72 nt14.59□□□□□ -0.07
RIM101P33400 tP(UGG)LtP(UGG)L 72 nt14.59□□□□□ -0.07
RIM101P33400 SUF7tP(UGG)M 72 nt14.59□□□□□ -0.07
RIM101P33400 tP(UGG)N1tP(UGG)N1 72 nt14.59□□□□□ -0.07
RIM101P33400 tP(UGG)N2tP(UGG)N2 72 nt14.59□□□□□ -0.07
RIM101P33400 tP(UGG)O1tP(UGG)O1 72 nt14.59□□□□□ -0.07
RIM101P33400 SUF11tP(UGG)O2 72 nt14.59□□□□□ -0.07
RIM101P33400 YJL107CYJL107C 1164 nt14.59□□□□□ -0.07
RIM101P33400 ATS1YAL020C 1002 nt14.58□□□□□ -0.08
RIM101P33400 YAL016C-BYAL016C-B 186 nt14.57□□□□□ -0.08
RIM101P33400 SPT5YML010W 3192 nt14.53□□□□□ -0.08
RIM101P33400 CCC1YLR220W 969 nt14.52□□□□□ -0.09
RIM101P33400 FTR1YER145C 1215 nt14.5□□□□□ -0.09
RIM101P33400 RSM23YGL129C 1353 nt14.49□□□□□ -0.09
RIM101P33400 THP3YPR045C 1413 nt14.49□□□□□ -0.09
RIM101P33400 STD1YOR047C 1335 nt14.46□□□□□ -0.09
RIM101P33400 YEL074WYEL074W 339 nt14.43□□□□□ -0.1
RIM101P33400 LSM12YHR121W 564 nt14.43□□□□□ -0.1
RIM101P33400 AST1YBL069W 1290 nt14.39□□□□□ -0.11
RIM101P33400 SSA4YER103W 1929 nt14.39□□□□□ -0.11
RIM101P33400 PEX27YOR193W 1131 nt14.36□□□□□ -0.11
RIM101P33400 YHL044WYHL044W 708 nt14.35□□□□□ -0.11
RIM101P33400 PHO92YDR374C 921 nt14.32□□□□□ -0.12
RIM101P33400 YLR036CYLR036C 612 nt14.27□□□□□ -0.13
RIM101P33400 ARE1YCR048W 1833 nt14.26□□□□□ -0.13
Retrieved 100 of 7,029 protein–RNA pairs in 15.6 ms