Protein–RNA interactions for Protein: P33202

UFD4, Ubiquitin fusion degradation protein 4, yeastyeast

Predictions only

Length 1,483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD4P33202 YML009W-BYML009W-B 477 nt33.88■■■■□ 3.01
UFD4P33202 NOP1YDL014W 984 nt32.93■■■□□ 2.86
UFD4P33202 NSR1YGR159C 1245 nt32.49■■■□□ 2.79
UFD4P33202 YKL036CYKL036C 393 nt31.41■■■□□ 2.62
UFD4P33202 YJL027CYJL027C 417 nt29.53■■■□□ 2.32
UFD4P33202 SCS3YGL126W 1143 nt29.22■■■□□ 2.27
UFD4P33202 Q0297Q0297 156 nt29.21■■■□□ 2.27
UFD4P33202 SRX1YKL086W 384 nt28.92■■■□□ 2.22
UFD4P33202 MDJ1YFL016C 1536 nt28.43■■■□□ 2.14
UFD4P33202 YCR051WYCR051W 669 nt27.63■■■□□ 2.01
UFD4P33202 YOL085CYOL085C 342 nt27.17■■□□□ 1.94
UFD4P33202 PKP1YIL042C 1185 nt26.88■■□□□ 1.89
UFD4P33202 SCJ1YMR214W 1134 nt26.67■■□□□ 1.86
UFD4P33202 RPP1BYDL130W 321 nt26.24■■□□□ 1.79
UFD4P33202 ATS1YAL020C 1002 nt26.22■■□□□ 1.79
UFD4P33202 TRN1tP(UGG)A 72 nt25.72■■□□□ 1.71
UFD4P33202 SUF9tP(UGG)F 72 nt25.72■■□□□ 1.71
UFD4P33202 SUF8tP(UGG)H 72 nt25.72■■□□□ 1.71
UFD4P33202 tP(UGG)LtP(UGG)L 72 nt25.72■■□□□ 1.71
UFD4P33202 SUF7tP(UGG)M 72 nt25.72■■□□□ 1.71
UFD4P33202 tP(UGG)N1tP(UGG)N1 72 nt25.72■■□□□ 1.71
UFD4P33202 tP(UGG)N2tP(UGG)N2 72 nt25.72■■□□□ 1.71
UFD4P33202 tP(UGG)O1tP(UGG)O1 72 nt25.72■■□□□ 1.71
UFD4P33202 SUF11tP(UGG)O2 72 nt25.72■■□□□ 1.71
UFD4P33202 CCC1YLR220W 969 nt25.51■■□□□ 1.67
UFD4P33202 DBP2YNL112W 1641 nt25.41■■□□□ 1.66
UFD4P33202 PET122YER153C 765 nt25.16■■□□□ 1.62
UFD4P33202 SCR1SCR1 522 nt24.93■■□□□ 1.58
UFD4P33202 tP(UGG)O3tP(UGG)O3 72 nt24.58■■□□□ 1.53
UFD4P33202 RTC3YHR087W 336 nt24.53■■□□□ 1.52
UFD4P33202 RRN5YLR141W 1092 nt24.39■■□□□ 1.5
UFD4P33202 RSB1YOR049C 1065 nt24.26■■□□□ 1.47
UFD4P33202 PST2YDR032C 597 nt24.09■■□□□ 1.45
UFD4P33202 YER088W-BYER088W-B 147 nt23.94■■□□□ 1.42
UFD4P33202 RVS167YDR388W 1449 nt23.93■■□□□ 1.42
UFD4P33202 YKL097CYKL097C 411 nt23.73■■□□□ 1.39
UFD4P33202 YBR190WYBR190W 312 nt23.68■■□□□ 1.38
UFD4P33202 YDJ1YNL064C 1230 nt23.62■■□□□ 1.37
UFD4P33202 SHR5YOL110W 714 nt23.37■■□□□ 1.33
UFD4P33202 GAR1YHR089C 618 nt23.16■■□□□ 1.3
UFD4P33202 SHU1YHL006C 453 nt23.07■■□□□ 1.28
UFD4P33202 YOR139CYOR139C 393 nt22.7■■□□□ 1.22
UFD4P33202 DEP1YAL013W 1218 nt22.62■■□□□ 1.21
UFD4P33202 YAL037C-BYAL037C-B 975 nt22.54■■□□□ 1.2
UFD4P33202 TIR1YER011W 765 nt22.28■■□□□ 1.16
UFD4P33202 URN1YPR152C 1398 nt22.24■■□□□ 1.15
UFD4P33202 NPL3YDR432W 1245 nt22.22■■□□□ 1.15
UFD4P33202 YNL208WYNL208W 600 nt22.09■■□□□ 1.13
UFD4P33202 RPN10YHR200W 807 nt21.94■■□□□ 1.1
UFD4P33202 SRB2YHR041C 633 nt21.92■■□□□ 1.1
UFD4P33202 MNP1YGL068W 585 nt21.9■■□□□ 1.1
UFD4P33202 SSA1YAL005C 1929 nt21.89■■□□□ 1.1
UFD4P33202 HOM6YJR139C 1080 nt21.62■■□□□ 1.05
UFD4P33202 YOL037CYOL037C 354 nt21.61■■□□□ 1.05
UFD4P33202 OPI9YLR338W 858 nt21.6■■□□□ 1.05
UFD4P33202 tM(CAU)CtM(CAU)C 72 nt21.59■■□□□ 1.05
UFD4P33202 IMT4tM(CAU)E 72 nt21.59■■□□□ 1.05
UFD4P33202 IMT3tM(CAU)J3 72 nt21.59■■□□□ 1.05
UFD4P33202 IMT1tM(CAU)O1 72 nt21.59■■□□□ 1.05
UFD4P33202 IMT2tM(CAU)P 72 nt21.59■■□□□ 1.05
UFD4P33202 WWM1YFL010C 636 nt21.57■■□□□ 1.04
UFD4P33202 YGR021WYGR021W 873 nt21.53■■□□□ 1.04
UFD4P33202 SAH1YER043C 1350 nt21.38■■□□□ 1.01
UFD4P33202 RKM5YLR137W 1104 nt21.3■■□□□ 1
UFD4P33202 YJR120WYJR120W 351 nt21.28■■□□□ 1
UFD4P33202 MOT3YMR070W 1473 nt21.25■□□□□ 0.99
UFD4P33202 YJR018WYJR018W 363 nt21.19■□□□□ 0.98
UFD4P33202 PUS2YGL063W 1113 nt21.17■□□□□ 0.98
UFD4P33202 YFL021C-AYFL021C-A 855 nt21.04■□□□□ 0.96
UFD4P33202 BSC6YOL137W 1494 nt21.03■□□□□ 0.96
UFD4P33202 YLR281CYLR281C 468 nt21.01■□□□□ 0.95
UFD4P33202 SSA3YBL075C 1950 nt20.95■□□□□ 0.94
UFD4P33202 PUN1YLR414C 792 nt20.95■□□□□ 0.94
UFD4P33202 RPP2BYDR382W 333 nt20.94■□□□□ 0.94
UFD4P33202 PUT4YOR348C 1884 nt20.91■□□□□ 0.94
UFD4P33202 ARE1YCR048W 1833 nt20.88■□□□□ 0.93
UFD4P33202 WHI5YOR083W 888 nt20.85■□□□□ 0.93
UFD4P33202 FMP45YDL222C 930 nt20.75■□□□□ 0.91
UFD4P33202 YHR049C-AYHR049C-A 297 nt20.73■□□□□ 0.91
UFD4P33202 BDH2YAL061W 1254 nt20.73■□□□□ 0.91
UFD4P33202 YLR236CYLR236C 324 nt20.69■□□□□ 0.9
UFD4P33202 YPR011CYPR011C 981 nt20.66■□□□□ 0.9
UFD4P33202 PTC2YER089C 1395 nt20.62■□□□□ 0.89
UFD4P33202 DSK2YMR276W 1122 nt20.53■□□□□ 0.88
UFD4P33202 MRPL8YJL063C 717 nt20.5■□□□□ 0.87
UFD4P33202 LSM3YLR438C-A 270 nt20.45■□□□□ 0.86
UFD4P33202 YCH1YGR203W 447 nt20.43■□□□□ 0.86
UFD4P33202 UBX6YJL048C 1191 nt20.42■□□□□ 0.86
UFD4P33202 POA1YBR022W 534 nt20.37■□□□□ 0.85
UFD4P33202 YBL100CYBL100C 315 nt20.35■□□□□ 0.85
UFD4P33202 BUD23YCR047C 828 nt20.28■□□□□ 0.84
UFD4P33202 SPP1YPL138C 1062 nt20.24■□□□□ 0.83
UFD4P33202 FIS1YIL065C 468 nt20.22■□□□□ 0.83
UFD4P33202 LPX1YOR084W 1164 nt20.22■□□□□ 0.83
UFD4P33202 YLR154C-GYLR154C-G 150 nt20.21■□□□□ 0.83
UFD4P33202 FPR4YLR449W 1179 nt20.21■□□□□ 0.83
UFD4P33202 YEL076C-AYEL076C-A 651 nt20.2■□□□□ 0.82
UFD4P33202 YEL076CYEL076C 651 nt20.2■□□□□ 0.82
UFD4P33202 YLR464WYLR464W 651 nt20.2■□□□□ 0.82
UFD4P33202 IMP2'YIL154C 1041 nt20.19■□□□□ 0.82
Retrieved 100 of 7,029 protein–RNA pairs in 12 ms