RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C DRS1P32892 752 aaKnown RBP10.2□□□□□ -0.78
CDC48YDL126C MTC1P47018 478 aaKnown RBP9.68□□□□□ -0.86
CDC48YDL126C TFA1P36100 482 aa9.1□□□□□ -0.95
CDC48YDL126C BFR2Q06631 534 aaKnown RBP9.03□□□□□ -0.96
CDC48YDL126C AVT3P36062 692 aa8.77□□□□□ -1.01
CDC48YDL126C DIP2Q12220 943 aaPredicted RBP8.54□□□□□ -1.04
CDC48YDL126C RQC2Q12532 1038 aaKnown RBP7.9□□□□□ -1.15
CDC48YDL126C RSE1Q04693 1361 aaKnown RBP7.81□□□□□ -1.16
CDC48YDL126C TAF7Q05021 590 aa7.72□□□□□ -1.17
CDC48YDL126C DMA1P38823 416 aa7.64□□□□□ -1.19
CDC48YDL126C ISW2Q08773 1120 aa7.57□□□□□ -1.2
CDC48YDL126C RPG1P38249 964 aaKnown RBP7.55□□□□□ -1.2
CDC48YDL126C SPT21P35209 758 aa7.53□□□□□ -1.2
CDC48YDL126C PRI1P10363 409 aa7.49□□□□□ -1.21
CDC48YDL126C RIM101P33400 625 aa7.49□□□□□ -1.21
CDC48YDL126C RPL17AP05740 184 aaKnown RBP7.48□□□□□ -1.21
CDC48YDL126C RPL17BP46990 184 aaKnown RBP7.48□□□□□ -1.21
CDC48YDL126C SGS1P35187 1447 aa7.43□□□□□ -1.22
CDC48YDL126C PTP3P40048 928 aa7.39□□□□□ -1.23
CDC48YDL126C INO80P53115 1489 aa7.35□□□□□ -1.23
CDC48YDL126C OXP1P28273 1286 aa7.32□□□□□ -1.24
CDC48YDL126C LEO1P38439 464 aa7.3□□□□□ -1.24
CDC48YDL126C SSP1P38871 571 aa7.29□□□□□ -1.24
CDC48YDL126C TCB3Q03640 1545 aaKnown RBP7.26□□□□□ -1.25
CDC48YDL126C SAS10Q12136 610 aaPredicted RBP7.24□□□□□ -1.25
CDC48YDL126C REB1P21538 810 aa7.23□□□□□ -1.25
CDC48YDL126C TY1B-DR4Q07793 1604 aa7.19□□□□□ -1.26
CDC48YDL126C MON2P48563 1636 aaPredicted RBP7.19□□□□□ -1.26
CDC48YDL126C YLR271WQ06152 274 aa7.18□□□□□ -1.26
CDC48YDL126C SPA2P23201 1466 aaKnown RBP7.15□□□□□ -1.26
CDC48YDL126C AAD16Q02895 342 aa7.13□□□□□ -1.27
CDC48YDL126C YKR023WP36119 530 aaKnown RBP7.13□□□□□ -1.27
CDC48YDL126C LEU3P08638 886 aa7.11□□□□□ -1.27
CDC48YDL126C SSN2P38931 1420 aa7.1□□□□□ -1.27
CDC48YDL126C TSR3Q12094 313 aaKnown RBP7.04□□□□□ -1.28
CDC48YDL126C HSL1P34244 1518 aa7.04□□□□□ -1.28
CDC48YDL126C SWR1Q05471 1514 aa7.02□□□□□ -1.28
CDC48YDL126C YAH1Q12184 172 aaKnown RBP7.01□□□□□ -1.29
CDC48YDL126C SPT6P23615 1451 aaKnown RBP7.01□□□□□ -1.29
CDC48YDL126C CST9Q06032 482 aa7□□□□□ -1.29
CDC48YDL126C FAP1P53971 965 aa6.99□□□□□ -1.29
CDC48YDL126C MGA2P40578 1113 aa6.99□□□□□ -1.29
CDC48YDL126C PSD2P53037 1138 aaKnown RBP6.95□□□□□ -1.3
CDC48YDL126C ABP1P15891 592 aaKnown RBP6.94□□□□□ -1.3
CDC48YDL126C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.94□□□□□ -1.3not detected
CDC48YDL126C RSM7P47150 247 aa6.92□□□□□ -1.3
CDC48YDL126C TFC8Q12308 588 aa6.92□□□□□ -1.3
CDC48YDL126C HIR3P47171 1648 aa6.91□□□□□ -1.3
CDC48YDL126C YIL055CP40523 627 aaKnown RBP6.87□□□□□ -1.31
CDC48YDL126C HOP09932 586 aa6.84□□□□□ -1.31
CDC48YDL126C XRN1P22147 1528 aaKnown RBP6.83□□□□□ -1.32
CDC48YDL126C DCD1P06773 312 aa6.83□□□□□ -1.32
CDC48YDL126C RAM2P29703 316 aa6.83□□□□□ -1.32
CDC48YDL126C YPR148CQ06523 435 aa6.82□□□□□ -1.32
CDC48YDL126C KOG1P38873 1557 aa6.81□□□□□ -1.32
CDC48YDL126C DNA2P38859 1522 aa6.8□□□□□ -1.32
CDC48YDL126C CDC27P38042 758 aa6.8□□□□□ -1.32
CDC48YDL126C DMA2P53924 522 aa6.79□□□□□ -1.32
CDC48YDL126C AI2P03876 854 aa6.78□□□□□ -1.32
CDC48YDL126C REV3P14284 1504 aa6.78□□□□□ -1.32
CDC48YDL126C RPN1P38764 993 aaKnown RBP6.76□□□□□ -1.33
CDC48YDL126C RCR1P38212 213 aa6.75□□□□□ -1.33
CDC48YDL126C SIN3P22579 1536 aa6.75□□□□□ -1.33
CDC48YDL126C BCH2P36122 765 aa6.75□□□□□ -1.33
CDC48YDL126C YCK3P39962 524 aa6.74□□□□□ -1.33
CDC48YDL126C THO2P53552 1597 aaKnown RBP6.74□□□□□ -1.33
CDC48YDL126C IFH1P39520 1085 aa6.72□□□□□ -1.33
CDC48YDL126C SSK2P53599 1579 aa6.7□□□□□ -1.34
CDC48YDL126C SET1P38827 1080 aaKnown RBP6.69□□□□□ -1.34
CDC48YDL126C BUD4P47136 1447 aa6.67□□□□□ -1.34
CDC48YDL126C IOC4Q04213 475 aa6.65□□□□□ -1.34
CDC48YDL126C DSF2P38213 736 aa6.65□□□□□ -1.35
CDC48YDL126C ESP1Q03018 1630 aa6.64□□□□□ -1.35
CDC48YDL126C CKB1P43639 278 aa6.64□□□□□ -1.35
CDC48YDL126C MYO2P19524 1574 aaKnown RBP6.63□□□□□ -1.35
CDC48YDL126C ATG2P53855 1592 aa6.63□□□□□ -1.35
CDC48YDL126C MRPL32P25348 183 aa6.62□□□□□ -1.35
CDC48YDL126C TAF2P23255 1407 aa6.62□□□□□ -1.35
CDC48YDL126C ORC1P54784 914 aaPredicted RBP6.61□□□□□ -1.35
CDC48YDL126C EPS1P40557 701 aa6.61□□□□□ -1.35
CDC48YDL126C ECM5Q03214 1411 aa6.61□□□□□ -1.35
CDC48YDL126C VPS70P47161 811 aa6.6□□□□□ -1.35
CDC48YDL126C BDF1P35817 686 aa6.59□□□□□ -1.35
CDC48YDL126C MAK11P20484 414 aaKnown RBP6.58□□□□□ -1.36
CDC48YDL126C PRY3P47033 881 aa6.58□□□□□ -1.36
CDC48YDL126C MRM1P25270 412 aa6.58□□□□□ -1.36
CDC48YDL126C MDS3P53094 1487 aa6.57□□□□□ -1.36
CDC48YDL126C VPS29P38759 282 aa6.56□□□□□ -1.36
CDC48YDL126C PEP1P32319 1579 aa6.56□□□□□ -1.36
CDC48YDL126C RLF2Q12495 606 aa6.55□□□□□ -1.36
CDC48YDL126C URN1Q06525 465 aaKnown RBP6.54□□□□□ -1.36
CDC48YDL126C NAP1P25293 417 aaKnown RBP6.54□□□□□ -1.36
CDC48YDL126C BBC1P47068 1157 aa6.54□□□□□ -1.36
CDC48YDL126C SKI3P17883 1432 aaKnown RBP6.53□□□□□ -1.36
CDC48YDL126C SPB4P25808 606 aaPredicted RBP6.52□□□□□ -1.37
CDC48YDL126C NUP42P49686 430 aaKnown RBP6.52□□□□□ -1.37
CDC48YDL126C YPK9Q12697 1472 aa6.52□□□□□ -1.37
CDC48YDL126C RTG3P38165 486 aa6.51□□□□□ -1.37
CDC48YDL126C PBS2P08018 668 aa6.5□□□□□ -1.37
CDC48YDL126C YNR021WP53723 404 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 9.3 ms