Protein–RNA interactions for Protein: P38165

RTG3, Retrograde regulation protein 3, yeastyeast

Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTG3P38165 YML009W-BYML009W-B 477 nt27.25■■□□□ 1.95
RTG3P38165 NSR1YGR159C 1245 nt26.92■■□□□ 1.9
RTG3P38165 NOP1YDL014W 984 nt26.43■■□□□ 1.82
RTG3P38165 YKL036CYKL036C 393 nt24.58■■□□□ 1.53
RTG3P38165 MDJ1YFL016C 1536 nt23.9■■□□□ 1.42
RTG3P38165 Q0297Q0297 156 nt23.26■■□□□ 1.31
RTG3P38165 SRX1YKL086W 384 nt23.17■■□□□ 1.3
RTG3P38165 YJL027CYJL027C 417 nt22.98■■□□□ 1.27
RTG3P38165 SCS3YGL126W 1143 nt22.5■■□□□ 1.19
RTG3P38165 YCR051WYCR051W 669 nt22.02■■□□□ 1.12
RTG3P38165 YOL085CYOL085C 342 nt21.35■■□□□ 1.01
RTG3P38165 DBP2YNL112W 1641 nt21.23■□□□□ 0.99
RTG3P38165 PKP1YIL042C 1185 nt21.08■□□□□ 0.97
RTG3P38165 TRN1tP(UGG)A 72 nt20.9■□□□□ 0.94
RTG3P38165 SUF9tP(UGG)F 72 nt20.9■□□□□ 0.94
RTG3P38165 SUF8tP(UGG)H 72 nt20.9■□□□□ 0.94
RTG3P38165 tP(UGG)LtP(UGG)L 72 nt20.9■□□□□ 0.94
RTG3P38165 SUF7tP(UGG)M 72 nt20.9■□□□□ 0.94
RTG3P38165 tP(UGG)N1tP(UGG)N1 72 nt20.9■□□□□ 0.94
RTG3P38165 tP(UGG)N2tP(UGG)N2 72 nt20.9■□□□□ 0.94
RTG3P38165 tP(UGG)O1tP(UGG)O1 72 nt20.9■□□□□ 0.94
RTG3P38165 SUF11tP(UGG)O2 72 nt20.9■□□□□ 0.94
RTG3P38165 RPP1BYDL130W 321 nt20.87■□□□□ 0.93
RTG3P38165 CCC1YLR220W 969 nt20.73■□□□□ 0.91
RTG3P38165 YBR190WYBR190W 312 nt20.24■□□□□ 0.83
RTG3P38165 ATS1YAL020C 1002 nt20.15■□□□□ 0.82
RTG3P38165 PET122YER153C 765 nt19.99■□□□□ 0.79
RTG3P38165 SCJ1YMR214W 1134 nt19.97■□□□□ 0.79
RTG3P38165 tP(UGG)O3tP(UGG)O3 72 nt19.83■□□□□ 0.77
RTG3P38165 RTC3YHR087W 336 nt19.82■□□□□ 0.76
RTG3P38165 RVS167YDR388W 1449 nt19.78■□□□□ 0.76
RTG3P38165 SCR1SCR1 522 nt19.67■□□□□ 0.74
RTG3P38165 RRN5YLR141W 1092 nt19.44■□□□□ 0.7
RTG3P38165 SHR5YOL110W 714 nt19.2■□□□□ 0.66
RTG3P38165 YDJ1YNL064C 1230 nt19.13■□□□□ 0.65
RTG3P38165 YER088W-BYER088W-B 147 nt19.05■□□□□ 0.64
RTG3P38165 RSB1YOR049C 1065 nt19.02■□□□□ 0.64
RTG3P38165 GAR1YHR089C 618 nt18.75■□□□□ 0.59
RTG3P38165 DEP1YAL013W 1218 nt18.72■□□□□ 0.59
RTG3P38165 PST2YDR032C 597 nt18.67■□□□□ 0.58
RTG3P38165 URN1YPR152C 1398 nt18.63■□□□□ 0.57
RTG3P38165 PUT4YOR348C 1884 nt18.37■□□□□ 0.53
RTG3P38165 YNL208WYNL208W 600 nt18.33■□□□□ 0.52
RTG3P38165 OPI9YLR338W 858 nt18.31■□□□□ 0.52
RTG3P38165 RPN10YHR200W 807 nt18.25■□□□□ 0.51
RTG3P38165 SAH1YER043C 1350 nt18.23■□□□□ 0.51
RTG3P38165 TIR1YER011W 765 nt18.1■□□□□ 0.49
RTG3P38165 ARE1YCR048W 1833 nt18.09■□□□□ 0.49
RTG3P38165 YKL097CYKL097C 411 nt17.93■□□□□ 0.46
RTG3P38165 SSA1YAL005C 1929 nt17.92■□□□□ 0.46
RTG3P38165 SHU1YHL006C 453 nt17.91■□□□□ 0.46
RTG3P38165 YHR049C-AYHR049C-A 297 nt17.82■□□□□ 0.44
RTG3P38165 POA1YBR022W 534 nt17.81■□□□□ 0.44
RTG3P38165 SRB2YHR041C 633 nt17.77■□□□□ 0.44
RTG3P38165 YJR018WYJR018W 363 nt17.76■□□□□ 0.43
RTG3P38165 PUN1YLR414C 792 nt17.72■□□□□ 0.43
RTG3P38165 YJR120WYJR120W 351 nt17.66■□□□□ 0.42
RTG3P38165 YAL037C-BYAL037C-B 975 nt17.66■□□□□ 0.42
RTG3P38165 PTC2YER089C 1395 nt17.56■□□□□ 0.4
RTG3P38165 BUD23YCR047C 828 nt17.41■□□□□ 0.38
RTG3P38165 YGR139WYGR139W 339 nt17.4■□□□□ 0.38
RTG3P38165 BSC6YOL137W 1494 nt17.38■□□□□ 0.37
RTG3P38165 WWM1YFL010C 636 nt17.38■□□□□ 0.37
RTG3P38165 RPP2BYDR382W 333 nt17.34■□□□□ 0.37
RTG3P38165 YOR139CYOR139C 393 nt17.3■□□□□ 0.36
RTG3P38165 NAB2YGL122C 1578 nt17.26■□□□□ 0.35
RTG3P38165 MNP1YGL068W 585 nt17.22■□□□□ 0.35
RTG3P38165 HOM6YJR139C 1080 nt17.22■□□□□ 0.35
RTG3P38165 SSA3YBL075C 1950 nt17.2■□□□□ 0.34
RTG3P38165 YGR021WYGR021W 873 nt17.16■□□□□ 0.34
RTG3P38165 FIS1YIL065C 468 nt17.11■□□□□ 0.33
RTG3P38165 BDH2YAL061W 1254 nt17.09■□□□□ 0.33
RTG3P38165 DAL1YIR027C 1383 nt17.07■□□□□ 0.32
RTG3P38165 FPR4YLR449W 1179 nt17.07■□□□□ 0.32
RTG3P38165 INM2YDR287W 879 nt17.05■□□□□ 0.32
RTG3P38165 NPL3YDR432W 1245 nt16.99■□□□□ 0.31
RTG3P38165 YFL021C-AYFL021C-A 855 nt16.99■□□□□ 0.31
RTG3P38165 RKM5YLR137W 1104 nt16.96■□□□□ 0.31
RTG3P38165 YBL100CYBL100C 315 nt16.96■□□□□ 0.31
RTG3P38165 MOT3YMR070W 1473 nt16.96■□□□□ 0.31
RTG3P38165 Q0182Q0182 405 nt16.95■□□□□ 0.3
RTG3P38165 PHO4YFR034C 939 nt16.94■□□□□ 0.3
RTG3P38165 LSM3YLR438C-A 270 nt16.87■□□□□ 0.29
RTG3P38165 YOL037CYOL037C 354 nt16.83■□□□□ 0.28
RTG3P38165 FUN26YAL022C 1554 nt16.79■□□□□ 0.28
RTG3P38165 TRM9YML014W 840 nt16.73■□□□□ 0.27
RTG3P38165 tM(CAU)CtM(CAU)C 72 nt16.61■□□□□ 0.25
RTG3P38165 IMT4tM(CAU)E 72 nt16.61■□□□□ 0.25
RTG3P38165 IMT3tM(CAU)J3 72 nt16.61■□□□□ 0.25
RTG3P38165 IMT1tM(CAU)O1 72 nt16.61■□□□□ 0.25
RTG3P38165 IMT2tM(CAU)P 72 nt16.61■□□□□ 0.25
RTG3P38165 YPS1YLR120C 1710 nt16.57■□□□□ 0.24
RTG3P38165 CCT6YDR188W 1641 nt16.57■□□□□ 0.24
RTG3P38165 YLR281CYLR281C 468 nt16.52■□□□□ 0.24
RTG3P38165 SPT5YML010W 3192 nt16.51■□□□□ 0.23
RTG3P38165 YDR095CYDR095C 411 nt16.48■□□□□ 0.23
RTG3P38165 WHI5YOR083W 888 nt16.46■□□□□ 0.23
RTG3P38165 ALF1YNL148C 765 nt16.44■□□□□ 0.22
RTG3P38165 PUS2YGL063W 1113 nt16.42■□□□□ 0.22
RTG3P38165 YHR165W-AYHR165W-A 312 nt16.35■□□□□ 0.21
Retrieved 100 of 7,029 protein–RNA pairs in 16.8 ms