RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W TY1A-DR5P0CX65 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-ER2P0CX66 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-GR3P0CX67 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-LR1P0CX68 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-MR2P0CX69 440 aa8.53□□□□□ -1.04
UBP8YMR223W TRK1P12685 1235 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-JR2P47099 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-DR1Q03856 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-ML1Q04706 440 aaKnown RBP8.53□□□□□ -1.04
UBP8YMR223W TY1A-BRQ12217 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-NL2Q12470 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-GR2Q12485 440 aa8.53□□□□□ -1.04
UBP8YMR223W SEC2P17065 759 aa8.52□□□□□ -1.05
UBP8YMR223W SPT16P32558 1035 aaKnown RBP8.52□□□□□ -1.05
UBP8YMR223W PAT1P25644 796 aaKnown RBP8.5□□□□□ -1.05
UBP8YMR223W IES2P40154 320 aa8.47□□□□□ -1.05
UBP8YMR223W SPB4P25808 606 aaPredicted RBP8.46□□□□□ -1.05
UBP8YMR223W NUP42P49686 430 aaKnown RBP8.46□□□□□ -1.06
UBP8YMR223W RRN7P40992 514 aa8.44□□□□□ -1.06
UBP8YMR223W RTF1P53064 558 aa8.43□□□□□ -1.06
UBP8YMR223W KEX2P13134 814 aa8.42□□□□□ -1.06
UBP8YMR223W CST6P40535 587 aa8.42□□□□□ -1.06
UBP8YMR223W LAM6Q08001 693 aa8.42□□□□□ -1.06
UBP8YMR223W TEA1P47988 759 aa8.4□□□□□ -1.06
UBP8YMR223W ERF2Q06551 359 aa8.39□□□□□ -1.07
UBP8YMR223W SIT4P20604 311 aa8.38□□□□□ -1.07
UBP8YMR223W YNL115CP53925 644 aa8.37□□□□□ -1.07
UBP8YMR223W DIT2P21595 489 aa8.36□□□□□ -1.07
UBP8YMR223W BDP1P46678 594 aa8.35□□□□□ -1.07
UBP8YMR223W FRK1Q03002 865 aaPredicted RBP8.34□□□□□ -1.07
UBP8YMR223W AGE1Q04412 482 aa8.33□□□□□ -1.08
UBP8YMR223W TUB4P53378 473 aa8.32□□□□□ -1.08
UBP8YMR223W HED1Q03937 162 aa8.32□□□□□ -1.08
UBP8YMR223W CDC4P07834 779 aa8.31□□□□□ -1.08
UBP8YMR223W MOD5P07884 428 aa8.31□□□□□ -1.08
UBP8YMR223W PAC1P39946 494 aaKnown RBP8.31□□□□□ -1.08
UBP8YMR223W NIS1P53939 407 aa8.31□□□□□ -1.08
UBP8YMR223W RQC2Q12532 1038 aaKnown RBP8.31□□□□□ -1.08
UBP8YMR223W AIR1P40507 360 aaKnown RBP8.3□□□□□ -1.08
UBP8YMR223W GCR2Q01722 534 aa8.3□□□□□ -1.08
UBP8YMR223W CLA4P48562 842 aa8.29□□□□□ -1.08
UBP8YMR223W BRE2P43132 505 aa8.29□□□□□ -1.08
UBP8YMR223W FPK1P53739 893 aa8.26□□□□□ -1.09
UBP8YMR223W TPD3P31383 635 aa8.25□□□□□ -1.09
UBP8YMR223W YMR196WQ04336 1088 aa8.25□□□□□ -1.09
UBP8YMR223W KXD1P53158 218 aa8.23□□□□□ -1.09
UBP8YMR223W YNR021WP53723 404 aaKnown RBP8.23□□□□□ -1.09
UBP8YMR223W ATF2P53296 535 aa8.21□□□□□ -1.09
UBP8YMR223W SLY41P22215 453 aa8.2□□□□□ -1.1
UBP8YMR223W RGA1P39083 1007 aa8.2□□□□□ -1.1
UBP8YMR223W HST2P53686 357 aa8.2□□□□□ -1.1
UBP8YMR223W HXT10P43581 546 aa8.19□□□□□ -1.1
UBP8YMR223W PUS6P53294 404 aa8.18□□□□□ -1.1
UBP8YMR223W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.17□□□□□ -1.1not detected
UBP8YMR223W AFT1P22149 690 aa8.16□□□□□ -1.1
UBP8YMR223W RRD1P40454 393 aaKnown RBP8.16□□□□□ -1.1
UBP8YMR223W PDC1P06169 563 aaKnown RBP8.15□□□□□ -1.1
UBP8YMR223W RPA14P50106 137 aa8.15□□□□□ -1.1
UBP8YMR223W PUS5Q06244 254 aa8.15□□□□□ -1.1
UBP8YMR223W ALR1Q08269 859 aa8.14□□□□□ -1.11
UBP8YMR223W MET32Q12041 191 aa8.14□□□□□ -1.11
UBP8YMR223W GLN1P32288 370 aaKnown RBP8.13□□□□□ -1.11
UBP8YMR223W ASH1P34233 588 aa8.13□□□□□ -1.11
UBP8YMR223W HST3P53687 447 aa8.13□□□□□ -1.11
UBP8YMR223W TBF1Q02457 562 aa8.13□□□□□ -1.11
UBP8YMR223W YPR097WQ06839 1073 aa8.13□□□□□ -1.11
UBP8YMR223W MMP1Q12372 583 aa8.13□□□□□ -1.11
UBP8YMR223W SYH1Q02875 849 aaKnown RBP8.12□□□□□ -1.11
UBP8YMR223W AIM7Q12156 149 aa8.12□□□□□ -1.11
UBP8YMR223W GLC3P32775 704 aa8.11□□□□□ -1.11
UBP8YMR223W SCJ1P25303 377 aa8.1□□□□□ -1.11
UBP8YMR223W YDL206WQ12424 762 aa8.1□□□□□ -1.11
UBP8YMR223W TRM1P15565 570 aaKnown RBP8.09□□□□□ -1.11
UBP8YMR223W YPL062WQ02781 134 aa8.09□□□□□ -1.11
UBP8YMR223W ENV9Q08651 330 aa8.09□□□□□ -1.11
UBP8YMR223W MET22P32179 357 aa8.07□□□□□ -1.12
UBP8YMR223W RGA2Q06407 1009 aa8.06□□□□□ -1.12
UBP8YMR223W GAR1P28007 205 aaKnown RBP8.05□□□□□ -1.12
UBP8YMR223W GBP2P25555 427 aaKnown RBP RIP-Chip data8.04□□□□□ -1.12not detected
UBP8YMR223W RTT106P40161 455 aa8.04□□□□□ -1.12
UBP8YMR223W MSB3P48566 633 aaPredicted RBP8.04□□□□□ -1.12
UBP8YMR223W ESS1P22696 170 aa8.03□□□□□ -1.12
UBP8YMR223W KIP2P28743 706 aa8.03□□□□□ -1.12
UBP8YMR223W YDR444WQ04093 687 aa8.02□□□□□ -1.13
UBP8YMR223W IXR1P33417 597 aa8.01□□□□□ -1.13
UBP8YMR223W YJR115WP47152 169 aa8.01□□□□□ -1.13
UBP8YMR223W MRT4P33201 236 aaKnown RBP8□□□□□ -1.13
UBP8YMR223W RSC30P38781 883 aa8□□□□□ -1.13
UBP8YMR223W LCB5Q06147 687 aaKnown RBP8□□□□□ -1.13
UBP8YMR223W YJU3P28321 313 aa7.98□□□□□ -1.13
UBP8YMR223W TYW1Q08960 810 aaKnown RBP7.98□□□□□ -1.13
UBP8YMR223W CSN12P47130 423 aa7.97□□□□□ -1.13
UBP8YMR223W UGA3P26370 528 aa7.96□□□□□ -1.13
UBP8YMR223W KTR1P27810 393 aaKnown RBP7.96□□□□□ -1.13
UBP8YMR223W VAC17P25591 423 aa7.95□□□□□ -1.14
UBP8YMR223W LEU3P08638 886 aa7.95□□□□□ -1.14
UBP8YMR223W PKH3Q03306 898 aaPredicted RBP7.95□□□□□ -1.14
UBP8YMR223W ARG8P18544 423 aa7.92□□□□□ -1.14
UBP8YMR223W PTK2P47116 818 aaKnown RBP7.92□□□□□ -1.14
UBP8YMR223W SRF1Q12516 437 aa7.91□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 8.9 ms