RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W MTC1P47018 478 aaKnown RBP16.3■□□□□ 0.2
UBP8YMR223W DRS1P32892 752 aaKnown RBP15.18■□□□□ 0.02
UBP8YMR223W FAP1P53971 965 aa14.61□□□□□ -0.07
UBP8YMR223W PRI1P10363 409 aa13.75□□□□□ -0.21
UBP8YMR223W PRY3P47033 881 aa13.73□□□□□ -0.21
UBP8YMR223W AAD16Q02895 342 aa13.68□□□□□ -0.22
UBP8YMR223W ISW2Q08773 1120 aa13.55□□□□□ -0.24
UBP8YMR223W RPG1P38249 964 aaKnown RBP13.34□□□□□ -0.27
UBP8YMR223W DIP2Q12220 943 aaPredicted RBP13.34□□□□□ -0.27
UBP8YMR223W HAA1Q12753 694 aaKnown RBP12.98□□□□□ -0.33
UBP8YMR223W YCK3P39962 524 aa12.93□□□□□ -0.34
UBP8YMR223W TSR3Q12094 313 aaKnown RBP12.93□□□□□ -0.34
UBP8YMR223W RSE1Q04693 1361 aaKnown RBP12.92□□□□□ -0.34
UBP8YMR223W AVT3P36062 692 aa12.87□□□□□ -0.35
UBP8YMR223W BFR2Q06631 534 aaKnown RBP12.62□□□□□ -0.39
UBP8YMR223W MRPL32P25348 183 aa12.51□□□□□ -0.41
UBP8YMR223W RPL17AP05740 184 aaKnown RBP12.46□□□□□ -0.41
UBP8YMR223W RPL17BP46990 184 aaKnown RBP12.46□□□□□ -0.41
UBP8YMR223W REB1P21538 810 aa12.43□□□□□ -0.42
UBP8YMR223W YGL015CP33199 130 aa12.03□□□□□ -0.48
UBP8YMR223W SPT21P35209 758 aa11.95□□□□□ -0.5
UBP8YMR223W YKR023WP36119 530 aaKnown RBP11.8□□□□□ -0.52
UBP8YMR223W CDC27P38042 758 aa11.8□□□□□ -0.52
UBP8YMR223W UBP10P53874 792 aaPredicted RBP11.59□□□□□ -0.55
UBP8YMR223W TFC8Q12308 588 aa11.59□□□□□ -0.55
UBP8YMR223W RIM101P33400 625 aa11.57□□□□□ -0.56
UBP8YMR223W HOP09932 586 aa11.52□□□□□ -0.57
UBP8YMR223W MAP2P38174 421 aaKnown RBP11.44□□□□□ -0.58
UBP8YMR223W DCD1P06773 312 aa11.42□□□□□ -0.58
UBP8YMR223W SCY1P53009 804 aa11.23□□□□□ -0.61
UBP8YMR223W BCH2P36122 765 aa11.18□□□□□ -0.62
UBP8YMR223W TFA1P36100 482 aa11.16□□□□□ -0.62
UBP8YMR223W SLX5P32828 619 aaKnown RBP11.14□□□□□ -0.63
UBP8YMR223W TIF4632P39936 914 aaKnown RBP11.12□□□□□ -0.63
UBP8YMR223W OXP1P28273 1286 aa11.11□□□□□ -0.63
UBP8YMR223W TGL3P40308 642 aa11.08□□□□□ -0.64
UBP8YMR223W BUD31P25337 157 aaPredicted RBP11.01□□□□□ -0.65
UBP8YMR223W YIL055CP40523 627 aaKnown RBP11.01□□□□□ -0.65
UBP8YMR223W PTP3P40048 928 aa10.96□□□□□ -0.65
UBP8YMR223W EPS1P40557 701 aa10.91□□□□□ -0.66
UBP8YMR223W BDF1P35817 686 aa10.87□□□□□ -0.67
UBP8YMR223W RSM7P47150 247 aa10.84□□□□□ -0.67
UBP8YMR223W BBC1P47068 1157 aa10.78□□□□□ -0.68
UBP8YMR223W UBP9P39967 754 aa10.75□□□□□ -0.69
UBP8YMR223W YAH1Q12184 172 aaKnown RBP10.75□□□□□ -0.69
UBP8YMR223W AI2P03876 854 aa10.73□□□□□ -0.69
UBP8YMR223W NSR1P27476 414 aaKnown RBP RIP-Chip data10.63□□□□□ -0.71not detected
UBP8YMR223W MST1P07236 462 aa10.62□□□□□ -0.71
UBP8YMR223W YLR271WQ06152 274 aa10.62□□□□□ -0.71
UBP8YMR223W YOR238WQ08634 303 aa10.57□□□□□ -0.72
UBP8YMR223W SSP1P38871 571 aa10.53□□□□□ -0.72
UBP8YMR223W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.51□□□□□ -0.73not detected
UBP8YMR223W PSD2P53037 1138 aaKnown RBP10.5□□□□□ -0.73
UBP8YMR223W YAP5P40574 245 aa10.5□□□□□ -0.73
UBP8YMR223W SIS1P25294 352 aaKnown RBP10.46□□□□□ -0.74
UBP8YMR223W YBL029C-AQ3E756 94 aa10.34□□□□□ -0.75
UBP8YMR223W MRM1P25270 412 aa10.31□□□□□ -0.76
UBP8YMR223W MGA2P40578 1113 aa10.3□□□□□ -0.76
UBP8YMR223W VNX1P42839 908 aa10.29□□□□□ -0.76
UBP8YMR223W GTT3P39996 337 aa10.24□□□□□ -0.77
UBP8YMR223W CST9Q06032 482 aa10.21□□□□□ -0.78
UBP8YMR223W SPP1Q03012 353 aa10.19□□□□□ -0.78
UBP8YMR223W WSC3Q12215 556 aa10.18□□□□□ -0.78
UBP8YMR223W RTG3P38165 486 aa10.16□□□□□ -0.78
UBP8YMR223W YMR1P47147 688 aaKnown RBP RIP-Chip data10.14□□□□□ -0.79not detected
UBP8YMR223W TIF11P38912 153 aaKnown RBP10.13□□□□□ -0.79
UBP8YMR223W VPS29P38759 282 aa10.12□□□□□ -0.79
UBP8YMR223W PIB1Q06651 286 aa10.1□□□□□ -0.79
UBP8YMR223W MSB4Q12317 492 aa10.07□□□□□ -0.8
UBP8YMR223W DBP1P24784 617 aaKnown RBP10.05□□□□□ -0.8
UBP8YMR223W EAP1P36041 632 aaKnown RBP10□□□□□ -0.81
UBP8YMR223W ULI1P43604 169 aa10□□□□□ -0.81
UBP8YMR223W STS1P38637 319 aa9.98□□□□□ -0.81
UBP8YMR223W FKH1P40466 484 aa9.97□□□□□ -0.81
UBP8YMR223W IOC2Q12072 812 aa9.97□□□□□ -0.81
UBP8YMR223W VMA1P17255 1071 aaKnown RBP9.96□□□□□ -0.82
UBP8YMR223W YFR006WP43590 535 aa9.96□□□□□ -0.82
UBP8YMR223W AIR2Q12476 344 aaKnown RBP9.96□□□□□ -0.82
UBP8YMR223W RCR1P38212 213 aa9.95□□□□□ -0.82
UBP8YMR223W YOL036WQ08206 761 aa9.95□□□□□ -0.82
UBP8YMR223W SAM3Q08986 587 aa9.95□□□□□ -0.82
UBP8YMR223W LDB19Q12502 818 aa9.94□□□□□ -0.82
UBP8YMR223W SET4P42948 560 aa9.9□□□□□ -0.83
UBP8YMR223W YJL171CP46992 396 aa9.9□□□□□ -0.83
UBP8YMR223W ABP1P15891 592 aaKnown RBP9.85□□□□□ -0.83
UBP8YMR223W TRP5P00931 707 aaKnown RBP9.84□□□□□ -0.83
UBP8YMR223W RTG1P32607 177 aa9.79□□□□□ -0.84
UBP8YMR223W YNL035CP53962 389 aaKnown RBP9.79□□□□□ -0.84
UBP8YMR223W SEC61P32915 480 aa9.78□□□□□ -0.84
UBP8YMR223W GYP5Q12344 894 aa9.78□□□□□ -0.84
UBP8YMR223W BMT6Q12291 365 aa9.77□□□□□ -0.85
UBP8YMR223W MAK11P20484 414 aaKnown RBP9.75□□□□□ -0.85
UBP8YMR223W NCR1Q12200 1170 aa9.75□□□□□ -0.85
UBP8YMR223W JIP4Q03361 876 aa9.73□□□□□ -0.85
UBP8YMR223W RAM2P29703 316 aa9.73□□□□□ -0.85
UBP8YMR223W HTA1P04911 132 aaKnown RBP9.71□□□□□ -0.86
UBP8YMR223W HTA2P04912 132 aa9.71□□□□□ -0.86
UBP8YMR223W TFG1P41895 735 aaPredicted RBP9.67□□□□□ -0.86
UBP8YMR223W DAN4P47179 1161 aa9.67□□□□□ -0.86
UBP8YMR223W DCW1P36091 449 aa9.65□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms