RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 SAMD9Q5K651 1589 aa13.95□□□□□ -0.18
HDAC6-209ENST00000440653 UGGT2Q9NYU1 1516 aa13.94□□□□□ -0.18
HDAC6-209ENST00000440653 TTC37Q6PGP7 1564 aa13.93□□□□□ -0.18
HDAC6-209ENST00000440653 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
HDAC6-209ENST00000440653 FER1L4A9Z1Z3 1794 aa13.93□□□□□ -0.18
HDAC6-209ENST00000440653 FYCO1Q9BQS8 1478 aa13.93□□□□□ -0.18
HDAC6-209ENST00000440653 POGZQ7Z3K3 1410 aa13.91□□□□□ -0.18
HDAC6-209ENST00000440653 HSPA1LP34931 641 aa13.9□□□□□ -0.18
HDAC6-209ENST00000440653 FANCAO15360 1455 aa13.9□□□□□ -0.18
HDAC6-209ENST00000440653 NEO1Q92859 1461 aa13.9□□□□□ -0.18
HDAC6-209ENST00000440653 ABCA8O94911 1581 aa13.9□□□□□ -0.18
HDAC6-209ENST00000440653 ABCA9Q8IUA7 1624 aa13.89□□□□□ -0.19
HDAC6-209ENST00000440653 PHF23Q9BUL5 403 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-209ENST00000440653 UHRF1BP1Q6BDS2 1440 aa13.86□□□□□ -0.19
HDAC6-209ENST00000440653 AKNAQ7Z591 1439 aa13.86□□□□□ -0.19
HDAC6-209ENST00000440653 RICTORQ6R327 1708 aa13.85□□□□□ -0.19
HDAC6-209ENST00000440653 FMN1Q68DA7 1419 aa13.85□□□□□ -0.19
HDAC6-209ENST00000440653 RRBP1Q9P2E9 1410 aaKnown RBP13.85□□□□□ -0.19
HDAC6-209ENST00000440653 PPARGC1BQ86YN6 1023 aaKnown RBP13.85□□□□□ -0.19
HDAC6-209ENST00000440653 DENND4BO75064 1496 aaPredicted RBP13.84□□□□□ -0.19
HDAC6-209ENST00000440653 ZNF335Q9H4Z2 1342 aaPredicted RBP13.83□□□□□ -0.2
HDAC6-209ENST00000440653 CASKIN1Q8WXD9 1431 aa13.82□□□□□ -0.2
HDAC6-209ENST00000440653 ATP10BO94823 1461 aa13.82□□□□□ -0.2
HDAC6-209ENST00000440653 ARHGEF12Q9NZN5 1544 aa13.82□□□□□ -0.2
HDAC6-209ENST00000440653 FHOD3Q2V2M9 1422 aa13.81□□□□□ -0.2
HDAC6-209ENST00000440653 SCAF1Q9H7N4 1312 aaKnown RBP13.81□□□□□ -0.2
HDAC6-209ENST00000440653 ZFYVE16Q7Z3T8 1539 aa13.8□□□□□ -0.2
HDAC6-209ENST00000440653 PIP4K2BP78356 416 aa13.8□□□□□ -0.2
HDAC6-209ENST00000440653 LRRC9Q6ZRR7 1453 aa13.8□□□□□ -0.2
HDAC6-209ENST00000440653 SETD1BQ9UPS6 1966 aaKnown RBP13.8□□□□□ -0.2
HDAC6-209ENST00000440653 HECW1Q76N89 1606 aa13.78□□□□□ -0.2
HDAC6-209ENST00000440653 NCOA1Q15788 1441 aa13.77□□□□□ -0.21
HDAC6-209ENST00000440653 ZMYM4Q5VZL5 1548 aa13.76□□□□□ -0.21
HDAC6-209ENST00000440653 RANGAP1P46060 587 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-209ENST00000440653 CCDC18Q5T9S5 1454 aa13.75□□□□□ -0.21
HDAC6-209ENST00000440653 RGS17Q9UGC6 210 aaPredicted RBP13.75□□□□□ -0.21
HDAC6-209ENST00000440653 EHBP1L1Q8N3D4 1523 aa13.74□□□□□ -0.21
HDAC6-209ENST00000440653 NCKAP5LQ9HCH0 1330 aa13.74□□□□□ -0.21
HDAC6-209ENST00000440653 CCER1Q8TC90 406 aaPredicted RBP13.74□□□□□ -0.21
HDAC6-209ENST00000440653 LRRIQ1Q96JM4 1722 aa13.73□□□□□ -0.21
HDAC6-209ENST00000440653 CCNB3Q8WWL7 1395 aa13.72□□□□□ -0.21
HDAC6-209ENST00000440653 SUPT6HQ7KZ85 1726 aaKnown RBP13.71□□□□□ -0.21
HDAC6-209ENST00000440653 MAGI2Q86UL8 1455 aa13.71□□□□□ -0.21
HDAC6-209ENST00000440653 ATP10AO60312 1499 aa13.69□□□□□ -0.22
HDAC6-209ENST00000440653 SENP3Q9H4L4 574 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-209ENST00000440653 C3P01024 1663 aa13.69□□□□□ -0.22
HDAC6-209ENST00000440653 CAMSAP1Q5T5Y3 1602 aa13.68□□□□□ -0.22
HDAC6-209ENST00000440653 CLSPNQ9HAW4 1339 aa13.68□□□□□ -0.22
HDAC6-209ENST00000440653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.68□□□□□ -0.22
HDAC6-209ENST00000440653 HNRNPUL2Q1KMD3 747 aaKnown RBP13.68□□□□□ -0.22
HDAC6-209ENST00000440653 P3H3Q8IVL6 736 aa13.68□□□□□ -0.22
HDAC6-209ENST00000440653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.68□□□□□ -0.22
HDAC6-209ENST00000440653 C9orf84Q5VXU9 1444 aa13.66□□□□□ -0.22
HDAC6-209ENST00000440653 TOM1O60784 492 aa13.66□□□□□ -0.22
HDAC6-209ENST00000440653 TRAPPC8Q9Y2L5 1435 aa13.65□□□□□ -0.22
HDAC6-209ENST00000440653 KANK4Q5T7N3 995 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-209ENST00000440653 POTEAQ6S8J7 498 aa13.62□□□□□ -0.23
HDAC6-209ENST00000440653 SCAPERQ9BY12 1400 aa13.62□□□□□ -0.23
HDAC6-209ENST00000440653 CFAP74Q9C0B2 1584 aa13.62□□□□□ -0.23
HDAC6-209ENST00000440653 RAPGEF6Q8TEU7 1601 aa13.6□□□□□ -0.23
HDAC6-209ENST00000440653 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.59□□□□□ -0.23
HDAC6-209ENST00000440653 ALKQ9UM73 1620 aa13.59□□□□□ -0.23
HDAC6-209ENST00000440653 SRCAPQ6ZRS2 3230 aa13.59□□□□□ -0.23
HDAC6-209ENST00000440653 MTUS2Q5JR59 1369 aa13.58□□□□□ -0.24
HDAC6-209ENST00000440653 FGD6Q6ZV73 1430 aa13.57□□□□□ -0.24
HDAC6-209ENST00000440653 SETD1AO15047 1707 aaKnown RBP13.57□□□□□ -0.24
HDAC6-209ENST00000440653 PKD2Q13563 968 aa13.56□□□□□ -0.24
HDAC6-209ENST00000440653 PPP6R1Q9UPN7 881 aa13.56□□□□□ -0.24
HDAC6-209ENST00000440653 MYOM3Q5VTT5 1437 aa13.56□□□□□ -0.24
HDAC6-209ENST00000440653 NCOA2Q15596 1464 aa13.55□□□□□ -0.24
HDAC6-209ENST00000440653 PTPN23Q9H3S7 1636 aa13.54□□□□□ -0.24
HDAC6-209ENST00000440653 GCC2Q8IWJ2 1684 aa13.54□□□□□ -0.24
HDAC6-209ENST00000440653 ITSN2Q9NZM3 1697 aa13.54□□□□□ -0.24
HDAC6-209ENST00000440653 PLEKHD1A6NEE1 506 aa13.54□□□□□ -0.24
HDAC6-209ENST00000440653 ESF1Q9H501 851 aaKnown RBP13.54□□□□□ -0.24
HDAC6-209ENST00000440653 TCOF1Q13428 1488 aaKnown RBP13.54□□□□□ -0.24
HDAC6-209ENST00000440653 DHX57Q6P158 1386 aaKnown RBP13.53□□□□□ -0.24
HDAC6-209ENST00000440653 NUP153P49790 1475 aaKnown RBP13.53□□□□□ -0.24
HDAC6-209ENST00000440653 PLA2R1Q13018 1463 aa13.51□□□□□ -0.25
HDAC6-209ENST00000440653 AFAP1Q8N556 730 aa13.51□□□□□ -0.25
HDAC6-209ENST00000440653 MYT1LQ9UL68 1186 aa13.5□□□□□ -0.25
HDAC6-209ENST00000440653 DIP2CQ9Y2E4 1556 aa13.49□□□□□ -0.25
HDAC6-209ENST00000440653 CPS1P31327 1500 aa13.49□□□□□ -0.25
HDAC6-209ENST00000440653 PTPRKQ15262 1439 aa13.49□□□□□ -0.25
HDAC6-209ENST00000440653 SETD5Q9C0A6 1442 aa13.49□□□□□ -0.25
HDAC6-209ENST00000440653 SHANK2Q9UPX8 1470 aa13.48□□□□□ -0.25
HDAC6-209ENST00000440653 MIA2Q96PC5 1412 aa13.48□□□□□ -0.25
HDAC6-209ENST00000440653 UPF1Q92900 1129 aaKnown RBP eCLIP13.48□□□□□ -0.25
HDAC6-209ENST00000440653 PLCH2O75038 1416 aa13.47□□□□□ -0.25
HDAC6-209ENST00000440653 NPATQ14207 1427 aa13.47□□□□□ -0.25
HDAC6-209ENST00000440653 CDK13Q14004 1512 aaKnown RBP13.47□□□□□ -0.25
HDAC6-209ENST00000440653 AGLP35573 1532 aa13.46□□□□□ -0.25
HDAC6-209ENST00000440653 ZMYM3Q14202 1370 aa13.45□□□□□ -0.26
HDAC6-209ENST00000440653 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
HDAC6-209ENST00000440653 ABCA6Q8N139 1617 aa13.45□□□□□ -0.26
HDAC6-209ENST00000440653 HFM1A2PYH4 1435 aa13.45□□□□□ -0.26
HDAC6-209ENST00000440653 REREQ9P2R6 1566 aa13.45□□□□□ -0.26
HDAC6-209ENST00000440653 MYO3AQ8NEV4 1616 aa13.44□□□□□ -0.26
HDAC6-209ENST00000440653 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-209ENST00000440653 CNTLNQ9NXG0 1405 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms