RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 NISCHQ9Y2I1 1504 aa20.32■□□□□ 0.84
HDAC6-209ENST00000440653 ABCC9O60706 1549 aa19.65■□□□□ 0.74
HDAC6-209ENST00000440653 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
HDAC6-209ENST00000440653 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
HDAC6-209ENST00000440653 DNAJC5Q9H3Z4 198 aa18.4■□□□□ 0.54
HDAC6-209ENST00000440653 PABPN1Q86U42 306 aaKnown RBP eCLIP18.2■□□□□ 0.5
HDAC6-209ENST00000440653 RB1CC1Q8TDY2 1594 aa18.17■□□□□ 0.5
HDAC6-209ENST00000440653 UNC13AQ9UPW8 1703 aa17.82■□□□□ 0.44
HDAC6-209ENST00000440653 NACADO15069 1562 aa17.79■□□□□ 0.44
HDAC6-209ENST00000440653 BICRAQ9NZM4 1560 aa17.76■□□□□ 0.43
HDAC6-209ENST00000440653 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
HDAC6-209ENST00000440653 DCAF8L2P0C7V8 631 aa17.68■□□□□ 0.42
HDAC6-209ENST00000440653 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
HDAC6-209ENST00000440653 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
HDAC6-209ENST00000440653 TRIM41Q8WV44 630 aa17.25■□□□□ 0.35
HDAC6-209ENST00000440653 SHROOM4Q9ULL8 1493 aa17.24■□□□□ 0.35
HDAC6-209ENST00000440653 CUX2O14529 1486 aa17.21■□□□□ 0.35
HDAC6-209ENST00000440653 MYO15BQ96JP2 1530 aa17.19■□□□□ 0.34
HDAC6-209ENST00000440653 ZCCHC6Q5VYS8 1495 aaKnown RBP17.02■□□□□ 0.32
HDAC6-209ENST00000440653 SCRIBQ14160 1630 aa16.96■□□□□ 0.31
HDAC6-209ENST00000440653 ERCC6Q03468 1493 aa16.96■□□□□ 0.31
HDAC6-209ENST00000440653 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
HDAC6-209ENST00000440653 NESP48681 1621 aa16.63■□□□□ 0.25
HDAC6-209ENST00000440653 THOC2Q8NI27 1593 aaKnown RBP16.57■□□□□ 0.24
HDAC6-209ENST00000440653 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
HDAC6-209ENST00000440653 SMARCA2P51531 1590 aa16.42■□□□□ 0.22
HDAC6-209ENST00000440653 AEBP2Q6ZN18 517 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-209ENST00000440653 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
HDAC6-209ENST00000440653 ATAD2BQ9ULI0 1458 aa16.33■□□□□ 0.2
HDAC6-209ENST00000440653 KIF21AQ7Z4S6 1674 aa16.32■□□□□ 0.2
HDAC6-209ENST00000440653 BAZ1AQ9NRL2 1556 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-209ENST00000440653 RIMBP3CA6NJZ7 1639 aa16.24■□□□□ 0.19
HDAC6-209ENST00000440653 RIMBP3BA6NNM3 1639 aa16.24■□□□□ 0.19
HDAC6-209ENST00000440653 RIMBP3Q9UFD9 1639 aa16.24■□□□□ 0.19
HDAC6-209ENST00000440653 HMGXB3Q12766 1538 aa16.23■□□□□ 0.19
HDAC6-209ENST00000440653 LAMC3Q9Y6N6 1575 aa16.22■□□□□ 0.19
HDAC6-209ENST00000440653 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
HDAC6-209ENST00000440653 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
HDAC6-209ENST00000440653 MRC2Q9UBG0 1479 aa16.11■□□□□ 0.17
HDAC6-209ENST00000440653 WDR62O43379 1518 aa16.1■□□□□ 0.17
HDAC6-209ENST00000440653 BAZ1BQ9UIG0 1483 aaKnown RBP16.09■□□□□ 0.17
HDAC6-209ENST00000440653 CYB5RLQ6IPT4 315 aa16.08■□□□□ 0.16
HDAC6-209ENST00000440653 ARHGEF11O15085 1522 aa16.08■□□□□ 0.16
HDAC6-209ENST00000440653 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
HDAC6-209ENST00000440653 CADPSQ9ULU8 1353 aa15.96■□□□□ 0.15
HDAC6-209ENST00000440653 ILDR1Q86SU0 546 aaPredicted RBP15.95■□□□□ 0.14
HDAC6-209ENST00000440653 ARAP1Q96P48 1450 aa15.88■□□□□ 0.13
HDAC6-209ENST00000440653 CEP164Q9UPV0 1460 aa15.85■□□□□ 0.13
HDAC6-209ENST00000440653 PEG3Q9GZU2 1588 aa15.85■□□□□ 0.13
HDAC6-209ENST00000440653 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
HDAC6-209ENST00000440653 FANCD2Q9BXW9 1451 aa15.78■□□□□ 0.12
HDAC6-209ENST00000440653 URB2Q14146 1524 aaKnown RBP15.74■□□□□ 0.11
HDAC6-209ENST00000440653 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
HDAC6-209ENST00000440653 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
HDAC6-209ENST00000440653 RSF1Q96T23 1441 aaPredicted RBP15.61■□□□□ 0.09
HDAC6-209ENST00000440653 CHD1O14646 1710 aa15.61■□□□□ 0.09
HDAC6-209ENST00000440653 FBLN2P98095 1184 aa15.57■□□□□ 0.08
HDAC6-209ENST00000440653 IFT140Q96RY7 1462 aa15.57■□□□□ 0.08
HDAC6-209ENST00000440653 CFTRP13569 1480 aa15.56■□□□□ 0.08
HDAC6-209ENST00000440653 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
HDAC6-209ENST00000440653 AQRO60306 1485 aaKnown RBP eCLIP15.47■□□□□ 0.071e-21■■■■■ 39.1
HDAC6-209ENST00000440653 WIZO95785 1651 aa15.46■□□□□ 0.07
HDAC6-209ENST00000440653 KDM4FA0A1W2PPD8 638 aa15.44■□□□□ 0.06
HDAC6-209ENST00000440653 CLASP1Q7Z460 1538 aa15.39■□□□□ 0.05
HDAC6-209ENST00000440653 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
HDAC6-209ENST00000440653 TOP2AP11388 1531 aaKnown RBP15.37■□□□□ 0.05
HDAC6-209ENST00000440653 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
HDAC6-209ENST00000440653 GAPVD1Q14C86 1478 aa15.32■□□□□ 0.04
HDAC6-209ENST00000440653 TARBP1Q13395 1621 aaKnown RBP15.32■□□□□ 0.04
HDAC6-209ENST00000440653 PRDM2Q13029 1718 aa15.26■□□□□ 0.03
HDAC6-209ENST00000440653 SYNJ1O43426 1573 aa15.25■□□□□ 0.03
HDAC6-209ENST00000440653 CHMP7Q8WUX9 453 aaPredicted RBP15.25■□□□□ 0.03
HDAC6-209ENST00000440653 KIF13AQ9H1H9 1805 aa15.24■□□□□ 0.03
HDAC6-209ENST00000440653 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
HDAC6-209ENST00000440653 TDRD9Q8NDG6 1382 aaKnown RBP15.23■□□□□ 0.03
HDAC6-209ENST00000440653 DNMBPQ6XZF7 1577 aa15.19■□□□□ 0.02
HDAC6-209ENST00000440653 RAD54L2Q9Y4B4 1467 aa15.19■□□□□ 0.02
HDAC6-209ENST00000440653 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
HDAC6-209ENST00000440653 ERCC6L2Q5T890 1561 aa15.18■□□□□ 0.02
HDAC6-209ENST00000440653 POLA1P09884 1462 aaPredicted RBP15.16■□□□□ 0.02
HDAC6-209ENST00000440653 FBXO41Q8TF61 875 aa15.13■□□□□ 0.01
HDAC6-209ENST00000440653 HECW2Q9P2P5 1572 aa15.11■□□□□ 0.01
HDAC6-209ENST00000440653 MAGI1Q96QZ7 1491 aaPredicted RBP15.09■□□□□ 0.01
HDAC6-209ENST00000440653 FAM69CQ0P6D2 419 aa15.09■□□□□ 0.01
HDAC6-209ENST00000440653 SOGA1O94964 1423 aa15.09■□□□□ 0.01
HDAC6-209ENST00000440653 SYNJ2O15056 1496 aa15.08■□□□□ 0.01
HDAC6-209ENST00000440653 KDM6BO15054 1643 aa15.05■□□□□ -0
HDAC6-209ENST00000440653 CCDC88BA6NC98 1476 aa15.04■□□□□ -0
HDAC6-209ENST00000440653 LMTK3Q96Q04 1460 aa15.03■□□□□ -0
HDAC6-209ENST00000440653 GRIN2BQ13224 1484 aa15.02■□□□□ -0
HDAC6-209ENST00000440653 ADGRL1O94910 1474 aa15.01□□□□□ -0.01
HDAC6-209ENST00000440653 ABCC10Q5T3U5 1492 aa15.01□□□□□ -0.01
HDAC6-209ENST00000440653 CEP170Q5SW79 1584 aa14.98□□□□□ -0.01
HDAC6-209ENST00000440653 WDR97A6NE52 1622 aa14.96□□□□□ -0.01
HDAC6-209ENST00000440653 ILDR2Q71H61 639 aa14.96□□□□□ -0.01
HDAC6-209ENST00000440653 SOCS7O14512 581 aa14.94□□□□□ -0.02
HDAC6-209ENST00000440653 TSPOAP1O95153 1857 aa14.94□□□□□ -0.02
HDAC6-209ENST00000440653 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
HDAC6-209ENST00000440653 DIP2BQ9P265 1576 aa14.94□□□□□ -0.02
HDAC6-209ENST00000440653 PBRM1Q86U86 1689 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms