RNA–Protein interactions for RNA: ENST00000382099.2

VLDLR-202, Transcript of very low density lipoprotein receptor, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VLDLR, Length 3,240 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VLDLR-202ENST00000382099 LRRC9Q6ZRR7 1453 aa19.75■□□□□ 0.75
VLDLR-202ENST00000382099 MAP3K1Q13233 1512 aa19.74■□□□□ 0.75
VLDLR-202ENST00000382099 HSPA5P11021 654 aaKnown RBP19.74■□□□□ 0.75
VLDLR-202ENST00000382099 MS4A1P11836 297 aa19.72■□□□□ 0.75
VLDLR-202ENST00000382099 L1TD1Q5T7N2 865 aaKnown RBP19.72■□□□□ 0.75
VLDLR-202ENST00000382099 POLR3GLQ9BT43 218 aa19.71■□□□□ 0.75
VLDLR-202ENST00000382099 PRDM2Q13029 1718 aa19.7■□□□□ 0.74
VLDLR-202ENST00000382099 SMG6Q86US8 1419 aaKnown RBP19.69■□□□□ 0.74
VLDLR-202ENST00000382099 CARMIL1Q5VZK9 1371 aa19.69■□□□□ 0.74
VLDLR-202ENST00000382099 DNAJC5BQ9UF47 199 aa19.67■□□□□ 0.74
VLDLR-202ENST00000382099 PCF11O94913 1555 aaKnown RBP19.66■□□□□ 0.74
VLDLR-202ENST00000382099 BCL11BQ9C0K0 894 aaPredicted RBP19.65■□□□□ 0.74
VLDLR-202ENST00000382099 CFAP43Q8NDM7 1665 aa19.65■□□□□ 0.74
VLDLR-202ENST00000382099 FGD5Q6ZNL6 1462 aa19.65■□□□□ 0.74
VLDLR-202ENST00000382099 CLCN1P35523 988 aa19.64■□□□□ 0.73
VLDLR-202ENST00000382099 EIF4G2P78344 907 aaKnown RBP eCLIP19.63■□□□□ 0.73
VLDLR-202ENST00000382099 GZF1Q9H116 711 aaPredicted RBP19.63■□□□□ 0.73
VLDLR-202ENST00000382099 ARID3AQ99856 593 aa19.63■□□□□ 0.73
VLDLR-202ENST00000382099 RNF123Q5XPI4 1314 aa19.61■□□□□ 0.73
VLDLR-202ENST00000382099 RRP1P56182 461 aaKnown RBP19.61■□□□□ 0.73
VLDLR-202ENST00000382099 SLKQ9H2G2 1235 aaPredicted RBP19.6■□□□□ 0.73
VLDLR-202ENST00000382099 PANK2Q9BZ23 570 aa19.59■□□□□ 0.73
VLDLR-202ENST00000382099 GOLGA6L3A6NEY3 463 aa19.58■□□□□ 0.72
VLDLR-202ENST00000382099 PDCL3Q9H2J4 239 aa19.58■□□□□ 0.72
VLDLR-202ENST00000382099 CNTLNQ9NXG0 1405 aa19.57■□□□□ 0.72
VLDLR-202ENST00000382099 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
VLDLR-202ENST00000382099 PDIA4P13667 645 aaKnown RBP19.56■□□□□ 0.72
VLDLR-202ENST00000382099 FHOD3Q2V2M9 1422 aa19.56■□□□□ 0.72
VLDLR-202ENST00000382099 CADPSQ9ULU8 1353 aa19.55■□□□□ 0.72
VLDLR-202ENST00000382099 XRCC6P12956 609 aaKnown RBP eCLIP19.55■□□□□ 0.72
VLDLR-202ENST00000382099 CALD1Q05682 793 aaKnown RBP19.55■□□□□ 0.72
VLDLR-202ENST00000382099 RCAN3Q9UKA8 241 aa19.53■□□□□ 0.72
VLDLR-202ENST00000382099 PRDM4Q9UKN5 801 aa19.53■□□□□ 0.72
VLDLR-202ENST00000382099 PLIN1O60240 522 aa19.53■□□□□ 0.72
VLDLR-202ENST00000382099 TRIM44Q96DX7 344 aaPredicted RBP19.5■□□□□ 0.71
VLDLR-202ENST00000382099 TMC1Q8TDI8 760 aa19.49■□□□□ 0.71
VLDLR-202ENST00000382099 CHIC2Q9UKJ5 165 aa19.49■□□□□ 0.71
VLDLR-202ENST00000382099 ZHX1Q9UKY1 873 aaPredicted RBP19.49■□□□□ 0.71
VLDLR-202ENST00000382099 BBXQ8WY36 941 aaPredicted RBP19.48■□□□□ 0.71
VLDLR-202ENST00000382099 FYCO1Q9BQS8 1478 aa19.47■□□□□ 0.71
VLDLR-202ENST00000382099 ESPNB1AK53 854 aa19.47■□□□□ 0.71
VLDLR-202ENST00000382099 AEBP2Q6ZN18 517 aaPredicted RBP19.47■□□□□ 0.71
VLDLR-202ENST00000382099 RAD54L2Q9Y4B4 1467 aa19.46■□□□□ 0.71
VLDLR-202ENST00000382099 TPM2P07951 284 aa19.46■□□□□ 0.71
VLDLR-202ENST00000382099 FAM13BQ9NYF5 915 aa19.46■□□□□ 0.7
VLDLR-202ENST00000382099 FAM161AQ3B820 660 aa19.45■□□□□ 0.7
VLDLR-202ENST00000382099 MYH16Q9H6N6 1097 aa19.45■□□□□ 0.7
VLDLR-202ENST00000382099 CASKIN1Q8WXD9 1431 aa19.45■□□□□ 0.7
VLDLR-202ENST00000382099 PTPRKQ15262 1439 aa19.44■□□□□ 0.7
VLDLR-202ENST00000382099 KIAA1211Q6ZU35 1233 aa19.43■□□□□ 0.7
VLDLR-202ENST00000382099 CRBNQ96SW2 442 aa19.43■□□□□ 0.7
VLDLR-202ENST00000382099 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.43■□□□□ 0.7
VLDLR-202ENST00000382099 PRDM10Q9NQV6 1147 aa19.42■□□□□ 0.7
VLDLR-202ENST00000382099 CCDC7Q96M83 1385 aa19.42■□□□□ 0.7
VLDLR-202ENST00000382099 FGD6Q6ZV73 1430 aa19.42■□□□□ 0.7
VLDLR-202ENST00000382099 SPRYD3Q8NCJ5 442 aa19.41■□□□□ 0.7
VLDLR-202ENST00000382099 EFCAB5A4FU69 1503 aa19.4■□□□□ 0.7
VLDLR-202ENST00000382099 CCDC18Q5T9S5 1454 aa19.4■□□□□ 0.7
VLDLR-202ENST00000382099 FANCD2Q9BXW9 1451 aa19.4■□□□□ 0.7
VLDLR-202ENST00000382099 AQRO60306 1485 aaKnown RBP eCLIP19.39■□□□□ 0.7
VLDLR-202ENST00000382099 NESP48681 1621 aa19.38■□□□□ 0.69
VLDLR-202ENST00000382099 CTTNBP2Q8WZ74 1663 aa19.37■□□□□ 0.69
VLDLR-202ENST00000382099 SNAPC4Q5SXM2 1469 aa19.37■□□□□ 0.69
VLDLR-202ENST00000382099 BECN1Q14457 450 aa19.37■□□□□ 0.69
VLDLR-202ENST00000382099 CHMP4BQ9H444 224 aaKnown RBP19.37■□□□□ 0.69
VLDLR-202ENST00000382099 LRRIQ1Q96JM4 1722 aa19.37■□□□□ 0.69
VLDLR-202ENST00000382099 ABCA10Q8WWZ4 1543 aa19.37■□□□□ 0.69
VLDLR-202ENST00000382099 TDRD9Q8NDG6 1382 aaKnown RBP19.37■□□□□ 0.69
VLDLR-202ENST00000382099 ERBB4Q15303 1308 aa19.36■□□□□ 0.69
VLDLR-202ENST00000382099 PTPN23Q9H3S7 1636 aa19.36■□□□□ 0.69
VLDLR-202ENST00000382099 POLA1P09884 1462 aaPredicted RBP19.36■□□□□ 0.69
VLDLR-202ENST00000382099 CENPJQ9HC77 1338 aaPredicted RBP19.36■□□□□ 0.69
VLDLR-202ENST00000382099 RRP7BPQ9NSQ0 103 aa19.35■□□□□ 0.69
VLDLR-202ENST00000382099 KDM5BQ9UGL1 1544 aa19.35■□□□□ 0.69
VLDLR-202ENST00000382099 C8orf34Q49A92 452 aa19.35■□□□□ 0.69
VLDLR-202ENST00000382099 HFM1A2PYH4 1435 aa19.34■□□□□ 0.69
VLDLR-202ENST00000382099 DNMBPQ6XZF7 1577 aa19.34■□□□□ 0.69
VLDLR-202ENST00000382099 UACAQ9BZF9 1416 aa19.34■□□□□ 0.69
VLDLR-202ENST00000382099 FOXD1Q16676 465 aa19.33■□□□□ 0.69
VLDLR-202ENST00000382099 NAP1L2Q9ULW6 460 aaPredicted RBP19.33■□□□□ 0.69
VLDLR-202ENST00000382099 CANXP27824 592 aaKnown RBP19.33■□□□□ 0.68
VLDLR-202ENST00000382099 AMER1Q5JTC6 1135 aaPredicted RBP19.32■□□□□ 0.68
VLDLR-202ENST00000382099 KIF7Q2M1P5 1343 aa19.32■□□□□ 0.68
VLDLR-202ENST00000382099 TOPBP1Q92547 1522 aa19.32■□□□□ 0.68
VLDLR-202ENST00000382099 CC2D2AQ9P2K1 1620 aa19.32■□□□□ 0.68
VLDLR-202ENST00000382099 MRE11P49959 708 aa19.31■□□□□ 0.68
VLDLR-202ENST00000382099 NAIPQ13075 1403 aa19.31■□□□□ 0.68
VLDLR-202ENST00000382099 CUL7Q14999 1698 aa19.31■□□□□ 0.68
VLDLR-202ENST00000382099 PNISRQ8TF01 805 aaKnown RBP19.3■□□□□ 0.68
VLDLR-202ENST00000382099 NCOA2Q15596 1464 aa19.29■□□□□ 0.68
VLDLR-202ENST00000382099 MTUS2Q5JR59 1369 aa19.29■□□□□ 0.68
VLDLR-202ENST00000382099 CDCA7LQ96GN5 454 aa19.29■□□□□ 0.68
VLDLR-202ENST00000382099 FMN1Q68DA7 1419 aa19.29■□□□□ 0.68
VLDLR-202ENST00000382099 KTN1Q86UP2 1357 aaKnown RBP19.28■□□□□ 0.68
VLDLR-202ENST00000382099 GRPEL1Q9HAV7 217 aa19.27■□□□□ 0.68
VLDLR-202ENST00000382099 FSD2A1L4K1 749 aa19.26■□□□□ 0.67
VLDLR-202ENST00000382099 R3HCC1Q9Y3T6 440 aaKnown RBP19.25■□□□□ 0.67
VLDLR-202ENST00000382099 C20orf194Q5TEA3 1177 aa19.25■□□□□ 0.67
VLDLR-202ENST00000382099 TRAK2O60296 914 aa19.24■□□□□ 0.67
VLDLR-202ENST00000382099 L3MBTL2Q969R5 705 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms