RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 A530084C06RikQ3UTW2 186 aa8.91□□□□□ -0.98
Nup88-202ENSMUST00000108530 Dph3Q8K0W9 82 aa8.91□□□□□ -0.98
Nup88-202ENSMUST00000108530 Defb39Q70KL3 74 aa8.91□□□□□ -0.98
Nup88-202ENSMUST00000108530 Gm37013Q8K491 104 aa8.9□□□□□ -0.98
Nup88-202ENSMUST00000108530 Defb12Q8K4N3 78 aa8.9□□□□□ -0.98
Nup88-202ENSMUST00000108530 Pkhd1E9PZ36 4059 aa8.89□□□□□ -0.99
Nup88-202ENSMUST00000108530 Reg3aO09037 175 aa8.87□□□□□ -0.99
Nup88-202ENSMUST00000108530 Igkv8-19A0A0G2JFN8 121 aa8.86□□□□□ -0.99
Nup88-202ENSMUST00000108530 Ccdc179J3QM76 67 aa8.85□□□□□ -0.99
Nup88-202ENSMUST00000108530 Znf706Q9D115 76 aaKnown RBP8.85□□□□□ -0.99
Nup88-202ENSMUST00000108530 Cypt14J3QPF7 87 aa8.83□□□□□ -1
Nup88-202ENSMUST00000108530 Rpl37aP61514 92 aa8.83□□□□□ -1
Nup88-202ENSMUST00000108530 Mrpl55Q9CZ83 127 aa8.83□□□□□ -1
Nup88-202ENSMUST00000108530 Ryr2E9Q401 4966 aaKnown RBP8.83□□□□□ -1
Nup88-202ENSMUST00000108530 Wfdc3Q14AE4 130 aa8.81□□□□□ -1
Nup88-202ENSMUST00000108530 Bean1Q9EQG5 255 aa8.81□□□□□ -1
Nup88-202ENSMUST00000108530 Gm10337F7DEP7 55 aa8.79□□□□□ -1
Nup88-202ENSMUST00000108530 Coa6Q8BGD8 79 aa8.77□□□□□ -1.01
Nup88-202ENSMUST00000108530 Fat2Q5F226 4351 aa8.73□□□□□ -1.01
Nup88-202ENSMUST00000108530 Gm10197F6QEY5 67 aa8.72□□□□□ -1.01
Nup88-202ENSMUST00000108530 RetnlbQ99P86 105 aa8.72□□□□□ -1.01
Nup88-202ENSMUST00000108530 Spint4Q9D263 159 aa8.72□□□□□ -1.01
Nup88-202ENSMUST00000108530 Spaca4Q80ZQ0 127 aa8.71□□□□□ -1.02
Nup88-202ENSMUST00000108530 Gm16253D3Z167 63 aa8.7□□□□□ -1.02
Nup88-202ENSMUST00000108530 Gm20604F8WIA3 75 aa8.7□□□□□ -1.02
Nup88-202ENSMUST00000108530 Coa5Q99M07 74 aa8.68□□□□□ -1.02
Nup88-202ENSMUST00000108530 Cdc42se1Q8BHL7 80 aa8.67□□□□□ -1.02
Nup88-202ENSMUST00000108530 SacsQ9JLC8 4582 aa8.67□□□□□ -1.02
Nup88-202ENSMUST00000108530 H2al1bA0A087WP11 105 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 A0A286YE49 62 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 H2al1kJ3QP08 105 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 H2al1eQ810S6 105 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 1700074P13RikQ9D9G7 251 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 H2al1mQ9DAD9 105 aa8.65□□□□□ -1.02
Nup88-202ENSMUST00000108530 Gm2310J3QNJ2 377 aa8.64□□□□□ -1.03
Nup88-202ENSMUST00000108530 Atox1O08997 68 aaKnown RBP8.64□□□□□ -1.03
Nup88-202ENSMUST00000108530 Kmt2cQ8BRH4 4903 aa8.62□□□□□ -1.03
Nup88-202ENSMUST00000108530 Lrp1Q91ZX7 4545 aaKnown RBP8.61□□□□□ -1.03
Nup88-202ENSMUST00000108530 Ryr1E9PZQ0 5035 aa8.6□□□□□ -1.03
Nup88-202ENSMUST00000108530 Gm10267M0QWD8 85 aa8.56□□□□□ -1.04
Nup88-202ENSMUST00000108530 Vps13bQ80TY5 3993 aa8.55□□□□□ -1.04
Nup88-202ENSMUST00000108530 Igkv3-3A0A140T8Q0 119 aa8.52□□□□□ -1.05
Nup88-202ENSMUST00000108530 Defb38Q7TNV7 63 aa8.52□□□□□ -1.05
Nup88-202ENSMUST00000108530 Chtf8P0CG14 533 aa8.51□□□□□ -1.05
Nup88-202ENSMUST00000108530 Pkhd1l1Q80ZA4 4249 aa8.51□□□□□ -1.05
Nup88-202ENSMUST00000108530 Cypt15B1AXS0 87 aa8.5□□□□□ -1.05
Nup88-202ENSMUST00000108530 Abca13Q5SSE9 5034 aa8.46□□□□□ -1.05
Nup88-202ENSMUST00000108530 Phxr4P15974 95 aa8.42□□□□□ -1.06
Nup88-202ENSMUST00000108530 Defb13Q8R2I4 64 aa8.42□□□□□ -1.06
Nup88-202ENSMUST00000108530 Krtap19-5O08632 62 aa8.42□□□□□ -1.06
Nup88-202ENSMUST00000108530 Fat3Q8BNA6 4555 aa8.42□□□□□ -1.06
Nup88-202ENSMUST00000108530 Dnah8Q91XQ0 4731 aa8.41□□□□□ -1.06
Nup88-202ENSMUST00000108530 4933415A04RikQ9D443 101 aa8.4□□□□□ -1.06
Nup88-202ENSMUST00000108530 Gm10160F6Y577 67 aa8.37□□□□□ -1.07
Nup88-202ENSMUST00000108530 Mycbp2Q7TPH6 4711 aa8.34□□□□□ -1.07
Nup88-202ENSMUST00000108530 Gm9736A0A1W2P7N1 277 aa8.29□□□□□ -1.08
Nup88-202ENSMUST00000108530 Gm20661K7N787 53 aa8.29□□□□□ -1.08
Nup88-202ENSMUST00000108530 Sox16Q62247 57 aa8.28□□□□□ -1.08
Nup88-202ENSMUST00000108530 Herc2Q4U2R1 4836 aa8.28□□□□□ -1.08
Nup88-202ENSMUST00000108530 SptssbQ925E8 76 aa8.26□□□□□ -1.09
Nup88-202ENSMUST00000108530 Kiaa1109A2AAE1 5005 aa8.24□□□□□ -1.09
Nup88-202ENSMUST00000108530 Rps29P62274 56 aa8.23□□□□□ -1.09
Nup88-202ENSMUST00000108530 Gm11939A2A592 99 aa8.22□□□□□ -1.09
Nup88-202ENSMUST00000108530 9230102O04RikA2ASX7 82 aa8.21□□□□□ -1.1
Nup88-202ENSMUST00000108530 Gm26620Q9CY65 116 aa8.19□□□□□ -1.1
Nup88-202ENSMUST00000108530 HydinQ80W93 5154 aa8.19□□□□□ -1.1
Nup88-202ENSMUST00000108530 Gm21798J3QNU5 87 aa8.18□□□□□ -1.1
Nup88-202ENSMUST00000108530 Birc6O88738 4882 aa8.14□□□□□ -1.11
Nup88-202ENSMUST00000108530 Gm10999F6Q4M4 69 aa8.14□□□□□ -1.11
Nup88-202ENSMUST00000108530 Krtap3-2Q9D638 99 aa8.13□□□□□ -1.11
Nup88-202ENSMUST00000108530 Krtap3-3Q9D7P0 99 aa8.13□□□□□ -1.11
Nup88-202ENSMUST00000108530 Sec61gP60060 68 aa8.13□□□□□ -1.11
Nup88-202ENSMUST00000108530 D6Ertd527eA0A0N4SWI3 464 aa8.1□□□□□ -1.11
Nup88-202ENSMUST00000108530 Gm3646F6S692 53 aa8.1□□□□□ -1.11
Nup88-202ENSMUST00000108530 Q8BGJ3 129 aa8.09□□□□□ -1.11
Nup88-202ENSMUST00000108530 Ndufb1P0DN34 57 aa8.08□□□□□ -1.12
Nup88-202ENSMUST00000108530 Gm5965D3Z724 196 aa8.08□□□□□ -1.12
Nup88-202ENSMUST00000108530 Dnhd1D3Z2X2 4750 aa8.07□□□□□ -1.12
Nup88-202ENSMUST00000108530 Gm5767A0A0J9YTU8 78 aa8.03□□□□□ -1.12
Nup88-202ENSMUST00000108530 2310034C09RikQ9D746 214 aa8.01□□□□□ -1.13
Nup88-202ENSMUST00000108530 PcloQ9QYX7 5068 aa8.01□□□□□ -1.13
Nup88-202ENSMUST00000108530 Gm4491E0CX42 125 aa8□□□□□ -1.13
Nup88-202ENSMUST00000108530 1700042G07RikB1AUF7 90 aa7.99□□□□□ -1.13
Nup88-202ENSMUST00000108530 Gm10643Q3URG9 111 aa7.98□□□□□ -1.13
Nup88-202ENSMUST00000108530 Lrp2A2ARV4 4660 aa7.97□□□□□ -1.13
Nup88-202ENSMUST00000108530 Defb1P56386 69 aa7.96□□□□□ -1.13
Nup88-202ENSMUST00000108530 Ndufs5Q99LY9 106 aa7.96□□□□□ -1.14
Nup88-202ENSMUST00000108530 Uqcr11Q9CPX8 56 aa7.95□□□□□ -1.14
Nup88-202ENSMUST00000108530 2310079G19RikQ9D6L6 185 aa7.95□□□□□ -1.14
Nup88-202ENSMUST00000108530 A930033H14RikG5E8X6 103 aa7.94□□□□□ -1.14
Nup88-202ENSMUST00000108530 Limd2Q8BGB5 128 aa7.94□□□□□ -1.14
Nup88-202ENSMUST00000108530 Krtap15-1Q9QZU5 150 aa7.93□□□□□ -1.14
Nup88-202ENSMUST00000108530 4930507D05RikQ8C9C9 103 aa7.85□□□□□ -1.15
Nup88-202ENSMUST00000108530 Rpl37Q9D823 97 aa7.79□□□□□ -1.16
Nup88-202ENSMUST00000108530 Rnase13Q5GAM7 153 aa7.76□□□□□ -1.17
Nup88-202ENSMUST00000108530 Gm9821Q8K076 103 aa7.73□□□□□ -1.17
Nup88-202ENSMUST00000108530 Herc1E9PZP8 4859 aa7.7□□□□□ -1.18
Nup88-202ENSMUST00000108530 2310057N15RikQ9D6T8 200 aa7.59□□□□□ -1.2
Nup88-202ENSMUST00000108530 Cox6b2Q80ZN9 88 aa7.56□□□□□ -1.2
Nup88-202ENSMUST00000108530 Gm17416Q30KP4 66 aa7.52□□□□□ -1.21
Retrieved 100 of 22,080 RNA–protein pairs in 50.2 ms