Protein–RNA interactions for Protein: Q9CZ83

Mrpl55, 39S ribosomal protein L55, mitochondrial, mousemouse

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mrpl55Q9CZ83 Gm25239-201ENSMUST00000174915 86 ntBASIC23.22■■□□□ 1.31
Mrpl55Q9CZ83 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Mrpl55Q9CZ83 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Mrpl55Q9CZ83 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Mrpl55Q9CZ83 Gm15042-201ENSMUST00000120212 883 ntBASIC20.36■□□□□ 0.85
Mrpl55Q9CZ83 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Mrpl55Q9CZ83 Gm24109-201ENSMUST00000175489 103 ntBASIC20.1■□□□□ 0.81
Mrpl55Q9CZ83 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Mrpl55Q9CZ83 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Mrpl55Q9CZ83 Gm15045-201ENSMUST00000117359 883 ntBASIC19.81■□□□□ 0.76
Mrpl55Q9CZ83 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Mrpl55Q9CZ83 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Mrpl55Q9CZ83 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Mrpl55Q9CZ83 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Mrpl55Q9CZ83 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Mrpl55Q9CZ83 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Mrpl55Q9CZ83 Gm23366-201ENSMUST00000175022 89 ntBASIC19.47■□□□□ 0.71
Mrpl55Q9CZ83 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Mrpl55Q9CZ83 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Mrpl55Q9CZ83 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Mrpl55Q9CZ83 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Mrpl55Q9CZ83 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.16■□□□□ 0.66
Mrpl55Q9CZ83 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Mrpl55Q9CZ83 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Mrpl55Q9CZ83 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Mrpl55Q9CZ83 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Mrpl55Q9CZ83 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Mrpl55Q9CZ83 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Mrpl55Q9CZ83 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Mrpl55Q9CZ83 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Mrpl55Q9CZ83 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC18.77■□□□□ 0.6
Mrpl55Q9CZ83 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Mrpl55Q9CZ83 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.73■□□□□ 0.59
Mrpl55Q9CZ83 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Mrpl55Q9CZ83 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Mrpl55Q9CZ83 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.58■□□□□ 0.56
Mrpl55Q9CZ83 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Mrpl55Q9CZ83 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Mrpl55Q9CZ83 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Mrpl55Q9CZ83 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mrpl55Q9CZ83 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Mrpl55Q9CZ83 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Mrpl55Q9CZ83 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mrpl55Q9CZ83 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mrpl55Q9CZ83 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Mrpl55Q9CZ83 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Mrpl55Q9CZ83 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.39■□□□□ 0.53
Mrpl55Q9CZ83 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mrpl55Q9CZ83 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mrpl55Q9CZ83 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Mrpl55Q9CZ83 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC18.36■□□□□ 0.53
Mrpl55Q9CZ83 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Mrpl55Q9CZ83 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Mrpl55Q9CZ83 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Mrpl55Q9CZ83 Gm25238-201ENSMUST00000174914 89 ntBASIC18.27■□□□□ 0.52
Mrpl55Q9CZ83 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mrpl55Q9CZ83 Psd-208ENSMUST00000224556 2034 ntBASIC18.23■□□□□ 0.51
Mrpl55Q9CZ83 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Mrpl55Q9CZ83 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mrpl55Q9CZ83 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mrpl55Q9CZ83 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Mrpl55Q9CZ83 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC18.08■□□□□ 0.48
Mrpl55Q9CZ83 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Mrpl55Q9CZ83 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Mrpl55Q9CZ83 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Mrpl55Q9CZ83 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Mrpl55Q9CZ83 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Mrpl55Q9CZ83 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Mrpl55Q9CZ83 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Mrpl55Q9CZ83 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC17.92■□□□□ 0.46
Mrpl55Q9CZ83 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Mrpl55Q9CZ83 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Mrpl55Q9CZ83 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Mrpl55Q9CZ83 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Mrpl55Q9CZ83 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Mrpl55Q9CZ83 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Mrpl55Q9CZ83 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Mrpl55Q9CZ83 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Mrpl55Q9CZ83 Gm27325-201ENSMUST00000175467 74 ntBASIC17.81■□□□□ 0.44
Mrpl55Q9CZ83 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Mrpl55Q9CZ83 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.8■□□□□ 0.44
Mrpl55Q9CZ83 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mrpl55Q9CZ83 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC17.79■□□□□ 0.44
Mrpl55Q9CZ83 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Mrpl55Q9CZ83 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mrpl55Q9CZ83 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mrpl55Q9CZ83 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC17.75■□□□□ 0.43
Mrpl55Q9CZ83 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Mrpl55Q9CZ83 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Mrpl55Q9CZ83 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Mrpl55Q9CZ83 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Mrpl55Q9CZ83 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Mrpl55Q9CZ83 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Mrpl55Q9CZ83 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC17.65■□□□□ 0.42
Mrpl55Q9CZ83 Gm25262-201ENSMUST00000174934 133 ntBASIC17.61■□□□□ 0.41
Mrpl55Q9CZ83 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
Mrpl55Q9CZ83 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Mrpl55Q9CZ83 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC17.6■□□□□ 0.41
Mrpl55Q9CZ83 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Mrpl55Q9CZ83 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms