RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 NischQ80TM9 1593 aa30.3■■■□□ 2.44
Nup88-202ENSMUST00000108530 Gm35339A0A140LHH9 1649 aa29.96■■■□□ 2.39
Nup88-202ENSMUST00000108530 Abcc9P70170 1546 aa29.35■■■□□ 2.29
Nup88-202ENSMUST00000108530 Abcc8B2RUS7 1588 aa28.92■■■□□ 2.22
Nup88-202ENSMUST00000108530 Rhox8Q6VSS7 320 aa27.6■■■□□ 2.01
Nup88-202ENSMUST00000108530 ScribQ80U72 1612 aa27.29■■□□□ 1.96
Nup88-202ENSMUST00000108530 Dcaf1Q80TR8 1506 aa26.75■■□□□ 1.87
Nup88-202ENSMUST00000108530 Kdm5dQ62240 1548 aa26.66■■□□□ 1.86
Nup88-202ENSMUST00000108530 Rb1cc1Q9ESK9 1588 aa26.51■■□□□ 1.83
Nup88-202ENSMUST00000108530 NacadQ5SWP3 1504 aa26.47■■□□□ 1.83
Nup88-202ENSMUST00000108530 Rtl1Q7M732 1744 aa26.36■■□□□ 1.81
Nup88-202ENSMUST00000108530 Baz1aO88379 1555 aa26.14■■□□□ 1.77
Nup88-202ENSMUST00000108530 Ccdc180J3QNE4 1664 aa26■■□□□ 1.75
Nup88-202ENSMUST00000108530 Sycp2Q9CUU3 1500 aa25.93■■□□□ 1.74
Nup88-202ENSMUST00000108530 Zcchc6Q5BLK4 1491 aaKnown RBP25.78■■□□□ 1.72
Nup88-202ENSMUST00000108530 Ccdc136Q3TVA9 1136 aa25.71■■□□□ 1.71
Nup88-202ENSMUST00000108530 Crybg2B7ZCC2 1516 aa25.68■■□□□ 1.7
Nup88-202ENSMUST00000108530 Smarca2Q6DIC0 1577 aa25.5■■□□□ 1.67
Nup88-202ENSMUST00000108530 BicraF8VPZ9 1578 aa25.47■■□□□ 1.67
Nup88-202ENSMUST00000108530 Cecr2E9Q2Z1 1453 aa25.16■■□□□ 1.62
Nup88-202ENSMUST00000108530 Trim41Q5NCC3 630 aa25.06■■□□□ 1.6
Nup88-202ENSMUST00000108530 Brd4Q9ESU6 1400 aaKnown RBP24.86■■□□□ 1.57
Nup88-202ENSMUST00000108530 Synj1Q8CHC4 1574 aa24.78■■□□□ 1.56
Nup88-202ENSMUST00000108530 HrcG5E8J6 738 aa24.73■■□□□ 1.55
Nup88-202ENSMUST00000108530 Smarca4Q3TKT4 1613 aaKnown RBP24.68■■□□□ 1.54
Nup88-202ENSMUST00000108530 CftrP26361 1476 aa24.67■■□□□ 1.54
Nup88-202ENSMUST00000108530 Cngb1E1AZ71 1325 aa24.62■■□□□ 1.53
Nup88-202ENSMUST00000108530 Esf1Q3V1V3 845 aaKnown RBP24.53■■□□□ 1.52
Nup88-202ENSMUST00000108530 Cttnbp2B9EJA2 1648 aa24.51■■□□□ 1.51
Nup88-202ENSMUST00000108530 Iqgap2Q3UQ44 1575 aa24.44■■□□□ 1.5
Nup88-202ENSMUST00000108530 Atad2bE9Q166 1460 aaKnown RBP24.43■■□□□ 1.5
Nup88-202ENSMUST00000108530 Golga3P55937 1487 aa24.43■■□□□ 1.5
Nup88-202ENSMUST00000108530 Pds5bQ4VA53 1446 aaKnown RBP24.41■■□□□ 1.5
Nup88-202ENSMUST00000108530 Chic1Q8CBW7 227 aa24.32■■□□□ 1.48
Nup88-202ENSMUST00000108530 Rsf1E9PWW9 1441 aaKnown RBP24.29■■□□□ 1.48
Nup88-202ENSMUST00000108530 Cep164Q5DU05 1446 aa24.24■■□□□ 1.47
Nup88-202ENSMUST00000108530 Ccdc88bQ4QRL3 1481 aa24.24■■□□□ 1.47
Nup88-202ENSMUST00000108530 Top2bQ64511 1612 aa24.2■■□□□ 1.46
Nup88-202ENSMUST00000108530 Cc2d2aQ8CFW7 1633 aa24.06■■□□□ 1.44
Nup88-202ENSMUST00000108530 Frmpd1A2AKB4 1549 aa24.06■■□□□ 1.44
Nup88-202ENSMUST00000108530 Gab3Q8BSM5 595 aa24.04■■□□□ 1.44
Nup88-202ENSMUST00000108530 Wdr62Q3U3T8 1523 aa24.03■■□□□ 1.44
Nup88-202ENSMUST00000108530 Ercc6F8VPZ5 1481 aa23.98■■□□□ 1.43
Nup88-202ENSMUST00000108530 Ehmt2Q9Z148 1263 aaKnown RBP23.89■■□□□ 1.41
Nup88-202ENSMUST00000108530 Fmn1Q05860 1466 aa23.88■■□□□ 1.41
Nup88-202ENSMUST00000108530 Thoc2B1AZI6 1594 aaKnown RBP23.79■■□□□ 1.4
Nup88-202ENSMUST00000108530 Unc13aQ4KUS2 1712 aa23.76■■□□□ 1.39
Nup88-202ENSMUST00000108530 Top2aQ01320 1528 aaKnown RBP23.67■■□□□ 1.38
Nup88-202ENSMUST00000108530 Kif15Q6P9L6 1387 aa23.66■■□□□ 1.38
Nup88-202ENSMUST00000108530 TnnQ80Z71 1560 aa23.65■■□□□ 1.38
Nup88-202ENSMUST00000108530 Phldb1Q6PDH0 1371 aaKnown RBP23.61■■□□□ 1.37
Nup88-202ENSMUST00000108530 Lamc3Q9R0B6 1581 aa23.59■■□□□ 1.37
Nup88-202ENSMUST00000108530 Il27Q8K3I6 234 aa23.56■■□□□ 1.36
Nup88-202ENSMUST00000108530 Ubl4bQ9CQ84 188 aa23.52■■□□□ 1.36
Nup88-202ENSMUST00000108530 Dnajc5bQ9CQ94 199 aa23.47■■□□□ 1.35
Nup88-202ENSMUST00000108530 Rapgef2Q8CHG7 1496 aa23.45■■□□□ 1.35
Nup88-202ENSMUST00000108530 Fam135aQ6NS59 1506 aa23.45■■□□□ 1.34
Nup88-202ENSMUST00000108530 Npm2Q80W85 207 aa23.4■■□□□ 1.34
Nup88-202ENSMUST00000108530 Camsap1A2AHC3 1581 aa23.37■■□□□ 1.33
Nup88-202ENSMUST00000108530 Cux2P70298 1426 aa23.36■■□□□ 1.33
Nup88-202ENSMUST00000108530 Myt1lP97500 1187 aa23.33■■□□□ 1.32
Nup88-202ENSMUST00000108530 Cep162Q6ZQ06 1403 aa23.31■■□□□ 1.32
Nup88-202ENSMUST00000108530 Ccdc18Q640L5 1455 aa23.3■■□□□ 1.32
Nup88-202ENSMUST00000108530 PtprkP35822 1457 aa23.29■■□□□ 1.32
Nup88-202ENSMUST00000108530 Npm1Q61937 292 aaKnown RBP23.23■■□□□ 1.31
Nup88-202ENSMUST00000108530 Acin1Q9JIX8 1338 aaKnown RBP23.22■■□□□ 1.31
Nup88-202ENSMUST00000108530 Grin2bQ01097 1482 aa23.17■■□□□ 1.3
Nup88-202ENSMUST00000108530 Shroom4Q1W617 1475 aa23.13■■□□□ 1.29
Nup88-202ENSMUST00000108530 Eif4g1Q6NZJ6 1600 aaKnown RBP23.12■■□□□ 1.29
Nup88-202ENSMUST00000108530 NrkQ9R0G8 1455 aa23.12■■□□□ 1.29
Nup88-202ENSMUST00000108530 Arhgap35Q91YM2 1499 aa23.09■■□□□ 1.29
Nup88-202ENSMUST00000108530 LrpprcQ6PB66 1392 aaKnown RBP23.06■■□□□ 1.28
Nup88-202ENSMUST00000108530 Zeb1Q64318 1117 aa23.05■■□□□ 1.28
Nup88-202ENSMUST00000108530 Rpgrip1Q9EPQ2 1331 aa23.01■■□□□ 1.27
Nup88-202ENSMUST00000108530 Mrc2Q64449 1479 aa23■■□□□ 1.27
Nup88-202ENSMUST00000108530 PogzQ8BZH4 1409 aaKnown RBP22.98■■□□□ 1.27
Nup88-202ENSMUST00000108530 Duox2A2AQ99 1517 aa22.95■■□□□ 1.26
Nup88-202ENSMUST00000108530 Dhx29Q6PGC1 1365 aaKnown RBP22.94■■□□□ 1.26
Nup88-202ENSMUST00000108530 Baz1bQ9Z277 1479 aa22.94■■□□□ 1.26
Nup88-202ENSMUST00000108530 Efcab5A0JP43 1406 aa22.9■■□□□ 1.26
Nup88-202ENSMUST00000108530 Kif21aQ9QXL2 1672 aa22.9■■□□□ 1.26
Nup88-202ENSMUST00000108530 Mroh2bQ7M6Y6 1581 aa22.89■■□□□ 1.25
Nup88-202ENSMUST00000108530 Clip1Q922J3 1391 aa22.88■■□□□ 1.25
Nup88-202ENSMUST00000108530 Map3k1P53349 1493 aa22.85■■□□□ 1.25
Nup88-202ENSMUST00000108530 Samd9lQ69Z37 1561 aa22.81■■□□□ 1.24
Nup88-202ENSMUST00000108530 UbtfP25976 765 aaKnown RBP22.79■■□□□ 1.24
Nup88-202ENSMUST00000108530 Ap3b1Q9Z1T1 1105 aa22.79■■□□□ 1.24
Nup88-202ENSMUST00000108530 Plekhg3Q4VAC9 1341 aa22.77■■□□□ 1.24
Nup88-202ENSMUST00000108530 Crocc2F6XLV1 1638 aa22.77■■□□□ 1.24
Nup88-202ENSMUST00000108530 Eea1Q8BL66 1411 aa22.74■■□□□ 1.23
Nup88-202ENSMUST00000108530 Rad54l2Q99NG0 1466 aa22.74■■□□□ 1.23
Nup88-202ENSMUST00000108530 Setd5Q5XJV7 1441 aa22.72■■□□□ 1.23
Nup88-202ENSMUST00000108530 Arap1Q4LDD4 1452 aa22.71■■□□□ 1.23
Nup88-202ENSMUST00000108530 Mier1Q5UAK0 511 aa22.7■■□□□ 1.22
Nup88-202ENSMUST00000108530 Plb1Q3TTY0 1478 aa22.67■■□□□ 1.22
Nup88-202ENSMUST00000108530 AqrQ8CFQ3 1481 aaKnown RBP22.67■■□□□ 1.22
Nup88-202ENSMUST00000108530 SynmQ70IV5 1561 aa22.66■■□□□ 1.22
Nup88-202ENSMUST00000108530 Carmil1Q6EDY6 1374 aa22.65■■□□□ 1.22
Nup88-202ENSMUST00000108530 Ankrd26Q811D2 1581 aa22.62■■□□□ 1.21
Nup88-202ENSMUST00000108530 Cux1P53564 1515 aa22.6■■□□□ 1.21
Retrieved 100 of 22,080 RNA–protein pairs in 81.7 ms