RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W VPS70P47161 811 aa10.53□□□□□ -0.72
RRP40YOL142W IOC2Q12072 812 aa10.52□□□□□ -0.73
RRP40YOL142W SOL3P38858 249 aa10.46□□□□□ -0.73
RRP40YOL142W LDB19Q12502 818 aa10.46□□□□□ -0.73
RRP40YOL142W SIS1P25294 352 aaKnown RBP10.44□□□□□ -0.74
RRP40YOL142W YEL023CP39992 682 aa10.44□□□□□ -0.74
RRP40YOL142W YGR273CP53329 174 aa10.43□□□□□ -0.74
RRP40YOL142W NST1P53935 1240 aa10.43□□□□□ -0.74
RRP40YOL142W CKB1P43639 278 aa10.4□□□□□ -0.74
RRP40YOL142W YNL035CP53962 389 aaKnown RBP10.4□□□□□ -0.74
RRP40YOL142W JIP4Q03361 876 aa10.4□□□□□ -0.74
RRP40YOL142W PTC4P38089 393 aa10.39□□□□□ -0.75
RRP40YOL142W RTG1P32607 177 aa10.38□□□□□ -0.75
RRP40YOL142W DAN4P47179 1161 aa10.37□□□□□ -0.75
RRP40YOL142W FKH1P40466 484 aa10.36□□□□□ -0.75
RRP40YOL142W REF2P42073 533 aaPredicted RBP10.36□□□□□ -0.75
RRP40YOL142W AI4P03878 556 aa10.33□□□□□ -0.76
RRP40YOL142W MPH3P0CE00 602 aa10.33□□□□□ -0.76
RRP40YOL142W UBP14P38237 781 aaKnown RBP10.33□□□□□ -0.76
RRP40YOL142W VHR2P40041 505 aa10.33□□□□□ -0.76
RRP40YOL142W SEC61P32915 480 aa10.32□□□□□ -0.76
RRP40YOL142W ILV3P39522 585 aaKnown RBP10.32□□□□□ -0.76
RRP40YOL142W YLR326WQ06170 240 aaKnown RBP10.31□□□□□ -0.76
RRP40YOL142W KEX1P09620 729 aa10.3□□□□□ -0.76
RRP40YOL142W AIR2Q12476 344 aaKnown RBP10.29□□□□□ -0.76
RRP40YOL142W NCR1Q12200 1170 aa10.28□□□□□ -0.76
RRP40YOL142W PBS2P08018 668 aa10.26□□□□□ -0.77
RRP40YOL142W YDR090CQ03193 310 aa10.25□□□□□ -0.77
RRP40YOL142W SPB4P25808 606 aaPredicted RBP10.24□□□□□ -0.77
RRP40YOL142W TFG1P41895 735 aaPredicted RBP10.23□□□□□ -0.77
RRP40YOL142W MAK21Q12176 1025 aaKnown RBP10.22□□□□□ -0.77
RRP40YOL142W RAD54P32863 898 aa10.21□□□□□ -0.77
RRP40YOL142W PCS60P38137 543 aaKnown RBP RIP-Chip data10.21□□□□□ -0.77not detected
RRP40YOL142W PML39Q03760 334 aa10.21□□□□□ -0.77
RRP40YOL142W COX6P00427 148 aa10.2□□□□□ -0.78
RRP40YOL142W DSF2P38213 736 aa10.2□□□□□ -0.78
RRP40YOL142W SLI15P38283 698 aa10.18□□□□□ -0.78
RRP40YOL142W KIC1P38692 1080 aa10.17□□□□□ -0.78
RRP40YOL142W YDL129WQ07555 291 aa10.17□□□□□ -0.78
RRP40YOL142W MID1P41821 548 aa10.16□□□□□ -0.78
RRP40YOL142W YJL171CP46992 396 aa10.14□□□□□ -0.79
RRP40YOL142W MAM3Q12296 706 aa10.13□□□□□ -0.79
RRP40YOL142W SAP30P38429 201 aa10.11□□□□□ -0.79
RRP40YOL142W BMT6Q12291 365 aa10.11□□□□□ -0.79
RRP40YOL142W LEU3P08638 886 aa10.08□□□□□ -0.8
RRP40YOL142W IES2P40154 320 aa10.07□□□□□ -0.8
RRP40YOL142W PEX29Q03370 554 aa10.06□□□□□ -0.8
RRP40YOL142W CDC73Q06697 393 aa10.05□□□□□ -0.8
RRP40YOL142W MPC54Q08550 464 aa10.05□□□□□ -0.8
RRP40YOL142W ORC6P38826 435 aa10.02□□□□□ -0.81
RRP40YOL142W NUP42P49686 430 aaKnown RBP10.02□□□□□ -0.81
RRP40YOL142W DPL1Q05567 589 aa10.02□□□□□ -0.81
RRP40YOL142W RPP1BP10622 106 aaKnown RBP10□□□□□ -0.81
RRP40YOL142W YDR344CQ05510 147 aa10□□□□□ -0.81
RRP40YOL142W DIT2P21595 489 aa9.98□□□□□ -0.81
RRP40YOL142W ARH1P48360 493 aa9.97□□□□□ -0.81
RRP40YOL142W GAP1P19145 602 aaPredicted RBP9.96□□□□□ -0.82
RRP40YOL142W NMA111P53920 997 aa9.96□□□□□ -0.82
RRP40YOL142W CSC1Q06538 782 aa9.94□□□□□ -0.82
RRP40YOL142W HAP5Q02516 242 aa9.93□□□□□ -0.82
RRP40YOL142W ELP4Q02884 456 aaKnown RBP9.93□□□□□ -0.82
RRP40YOL142W ISU2Q12056 156 aa9.93□□□□□ -0.82
RRP40YOL142W PSE1P32337 1089 aaKnown RBP9.92□□□□□ -0.82
RRP40YOL142W PRE3P38624 215 aa9.92□□□□□ -0.82
RRP40YOL142W YNR021WP53723 404 aaKnown RBP9.91□□□□□ -0.82
RRP40YOL142W MVP1P40959 511 aaKnown RBP9.9□□□□□ -0.82
RRP40YOL142W RGR1P19263 1082 aa9.89□□□□□ -0.83
RRP40YOL142W PEX21P50091 288 aa9.89□□□□□ -0.83
RRP40YOL142W TFB4Q12004 338 aa9.89□□□□□ -0.83
RRP40YOL142W CHL1P22516 861 aaPredicted RBP9.88□□□□□ -0.83
RRP40YOL142W GLC3P32775 704 aa9.85□□□□□ -0.83
RRP40YOL142W BNI4P53858 892 aa9.85□□□□□ -0.83
RRP40YOL142W SPT23P35210 1082 aa9.84□□□□□ -0.83
RRP40YOL142W RPN1P38764 993 aaKnown RBP9.84□□□□□ -0.83
RRP40YOL142W TUM1Q08686 304 aaKnown RBP9.83□□□□□ -0.84
RRP40YOL142W YPR109WQ06104 294 aa9.82□□□□□ -0.84
RRP40YOL142W YRR1Q12172 810 aa9.82□□□□□ -0.84
RRP40YOL142W PDR1P12383 1068 aa9.79□□□□□ -0.84
RRP40YOL142W ATF2P53296 535 aa9.79□□□□□ -0.84
RRP40YOL142W AIM7Q12156 149 aa9.78□□□□□ -0.84
RRP40YOL142W CLB5P30283 435 aa9.77□□□□□ -0.85
RRP40YOL142W PTC2P39966 464 aaKnown RBP9.77□□□□□ -0.85
RRP40YOL142W TEA1P47988 759 aa9.76□□□□□ -0.85
RRP40YOL142W RAM1P22007 431 aa9.74□□□□□ -0.85
RRP40YOL142W LEO1P38439 464 aa9.74□□□□□ -0.85
RRP40YOL142W YML082WQ04533 649 aaKnown RBP9.73□□□□□ -0.85
RRP40YOL142W NUD1P32336 851 aa9.71□□□□□ -0.86
RRP40YOL142W YPR015CQ12531 247 aa9.7□□□□□ -0.86
RRP40YOL142W KIN1P13185 1064 aa9.69□□□□□ -0.86
RRP40YOL142W STR2P47164 639 aa9.66□□□□□ -0.86
RRP40YOL142W NIS1P53939 407 aa9.66□□□□□ -0.86
RRP40YOL142W VRP1P37370 817 aa9.65□□□□□ -0.86
RRP40YOL142W ISM1P48526 1002 aa9.65□□□□□ -0.86
RRP40YOL142W BCK2P33306 851 aa9.64□□□□□ -0.87
RRP40YOL142W NPL4P33755 580 aa9.63□□□□□ -0.87
RRP40YOL142W BUD20Q08004 166 aaPredicted RBP9.62□□□□□ -0.87
RRP40YOL142W SIT4P20604 311 aa9.61□□□□□ -0.87
RRP40YOL142W FPK1P53739 893 aa9.6□□□□□ -0.87
RRP40YOL142W KEX2P13134 814 aa9.59□□□□□ -0.87
RRP40YOL142W YMR196WQ04336 1088 aa9.59□□□□□ -0.87
Retrieved 100 of 5,963 RNA–protein pairs in 44 ms