RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	MTC1	P47018	478 aa	Known RBP	17.57	■□□□□ 0.4
RRP40	YOL142W	DRS1	P32892	752 aa	Known RBP	17.26	■□□□□ 0.35
RRP40	YOL142W	FAP1	P53971	965 aa		14.84	□□□□□ -0.03
RRP40	YOL142W	DIP2	Q12220	943 aa	Predicted RBP	14.82	□□□□□ -0.04
RRP40	YOL142W	BFR2	Q06631	534 aa	Known RBP	14.76	□□□□□ -0.05
RRP40	YOL142W	AVT3	P36062	692 aa		14.53	□□□□□ -0.08
RRP40	YOL142W	ISW2	Q08773	1120 aa		14.37	□□□□□ -0.11
RRP40	YOL142W	PRI1	P10363	409 aa		14.33	□□□□□ -0.12
RRP40	YOL142W	RPG1	P38249	964 aa	Known RBP	14.21	□□□□□ -0.13
RRP40	YOL142W	AAD16	Q02895	342 aa		14.13	□□□□□ -0.15
RRP40	YOL142W	RSE1	Q04693	1361 aa	Known RBP	14.09	□□□□□ -0.15
RRP40	YOL142W	PRY3	P47033	881 aa		13.92	□□□□□ -0.18
RRP40	YOL142W	TFA1	P36100	482 aa		13.62	□□□□□ -0.23
RRP40	YOL142W	RPL17A	P05740	184 aa	Known RBP	13.6	□□□□□ -0.23
RRP40	YOL142W	RPL17B	P46990	184 aa	Known RBP	13.6	□□□□□ -0.23
RRP40	YOL142W	TSR3	Q12094	313 aa	Known RBP	13.59	□□□□□ -0.23
RRP40	YOL142W	REB1	P21538	810 aa		13.45	□□□□□ -0.26
RRP40	YOL142W	YCK3	P39962	524 aa		13.18	□□□□□ -0.3
RRP40	YOL142W	HAA1	Q12753	694 aa	Known RBP	13.1	□□□□□ -0.31
RRP40	YOL142W	SPT21	P35209	758 aa		13.07	□□□□□ -0.32
RRP40	YOL142W	MRPL32	P25348	183 aa		13.05	□□□□□ -0.32
RRP40	YOL142W	RIM101	P33400	625 aa		12.8	□□□□□ -0.36
RRP40	YOL142W	YKR023W	P36119	530 aa	Known RBP	12.74	□□□□□ -0.37
RRP40	YOL142W	CDC27	P38042	758 aa		12.57	□□□□□ -0.4
RRP40	YOL142W	TFC8	Q12308	588 aa		12.48	□□□□□ -0.41
RRP40	YOL142W	HO	P09932	586 aa		12.47	□□□□□ -0.41
RRP40	YOL142W	OXP1	P28273	1286 aa		12.41	□□□□□ -0.42
RRP40	YOL142W	DCD1	P06773	312 aa		12.4	□□□□□ -0.42
RRP40	YOL142W	YGL015C	P33199	130 aa		12.27	□□□□□ -0.45
RRP40	YOL142W	YIL055C	P40523	627 aa	Known RBP	12.22	□□□□□ -0.45
RRP40	YOL142W	PTP3	P40048	928 aa		12.17	□□□□□ -0.46
RRP40	YOL142W	YAH1	Q12184	172 aa	Known RBP	12.16	□□□□□ -0.46
RRP40	YOL142W	BCH2	P36122	765 aa		12.1	□□□□□ -0.47
RRP40	YOL142W	UBP10	P53874	792 aa	Predicted RBP	12.09	□□□□□ -0.47
RRP40	YOL142W	MAP2	P38174	421 aa	Known RBP	12.07	□□□□□ -0.48
RRP40	YOL142W	SSP1	P38871	571 aa		12.06	□□□□□ -0.48
RRP40	YOL142W	RSM7	P47150	247 aa		12.03	□□□□□ -0.48
RRP40	YOL142W	SCY1	P53009	804 aa		11.99	□□□□□ -0.49
RRP40	YOL142W	YLR271W	Q06152	274 aa		11.99	□□□□□ -0.49
RRP40	YOL142W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.9	□□□□□ -0.5	not detected
RRP40	YOL142W	EPS1	P40557	701 aa		11.87	□□□□□ -0.51
RRP40	YOL142W	AI2	P03876	854 aa		11.86	□□□□□ -0.51
RRP40	YOL142W	BBC1	P47068	1157 aa		11.8	□□□□□ -0.52
RRP40	YOL142W	BDF1	P35817	686 aa		11.79	□□□□□ -0.52
RRP40	YOL142W	SLX5	P32828	619 aa	Known RBP	11.78	□□□□□ -0.52
RRP40	YOL142W	PSD2	P53037	1138 aa	Known RBP	11.72	□□□□□ -0.53
RRP40	YOL142W	MGA2	P40578	1113 aa		11.67	□□□□□ -0.54
RRP40	YOL142W	CST9	Q06032	482 aa		11.61	□□□□□ -0.55
RRP40	YOL142W	TIF4632	P39936	914 aa	Known RBP	11.58	□□□□□ -0.56
RRP40	YOL142W	TGL3	P40308	642 aa		11.51	□□□□□ -0.57
RRP40	YOL142W	MRM1	P25270	412 aa		11.48	□□□□□ -0.57
RRP40	YOL142W	RTG3	P38165	486 aa		11.29	□□□□□ -0.6
RRP40	YOL142W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.27	□□□□□ -0.61	not detected
RRP40	YOL142W	RCR1	P38212	213 aa		11.26	□□□□□ -0.61
RRP40	YOL142W	VPS29	P38759	282 aa		11.21	□□□□□ -0.61
RRP40	YOL142W	YAP5	P40574	245 aa		11.21	□□□□□ -0.61
RRP40	YOL142W	YOR238W	Q08634	303 aa		11.16	□□□□□ -0.62
RRP40	YOL142W	RAM2	P29703	316 aa		11.14	□□□□□ -0.63
RRP40	YOL142W	MST1	P07236	462 aa		11.13	□□□□□ -0.63
RRP40	YOL142W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.13	□□□□□ -0.63	not detected
RRP40	YOL142W	RQC2	Q12532	1038 aa	Known RBP	11.08	□□□□□ -0.64
RRP40	YOL142W	DBP1	P24784	617 aa	Known RBP	11.07	□□□□□ -0.64
RRP40	YOL142W	STS1	P38637	319 aa		11.07	□□□□□ -0.64
RRP40	YOL142W	DMA1	P38823	416 aa		11.07	□□□□□ -0.64
RRP40	YOL142W	PIB1	Q06651	286 aa		11.06	□□□□□ -0.64
RRP40	YOL142W	YFR006W	P43590	535 aa		11.05	□□□□□ -0.64
RRP40	YOL142W	MAK11	P20484	414 aa	Known RBP	11	□□□□□ -0.65
RRP40	YOL142W	GTT3	P39996	337 aa		10.92	□□□□□ -0.66
RRP40	YOL142W	UBP9	P39967	754 aa		10.9	□□□□□ -0.66
RRP40	YOL142W	VMA1	P17255	1071 aa	Known RBP	10.89	□□□□□ -0.67
RRP40	YOL142W	BUD31	P25337	157 aa	Predicted RBP	10.87	□□□□□ -0.67
RRP40	YOL142W	COQ8	P27697	501 aa		10.85	□□□□□ -0.67
RRP40	YOL142W	MIF2	P35201	549 aa		10.84	□□□□□ -0.67
RRP40	YOL142W	YBL029C-A	Q3E756	94 aa		10.83	□□□□□ -0.68
RRP40	YOL142W	WSC3	Q12215	556 aa		10.82	□□□□□ -0.68
RRP40	YOL142W	EDS1	P38073	919 aa		10.81	□□□□□ -0.68
RRP40	YOL142W	SET1	P38827	1080 aa	Known RBP	10.81	□□□□□ -0.68
RRP40	YOL142W	SAM3	Q08986	587 aa		10.79	□□□□□ -0.68
RRP40	YOL142W	VNX1	P42839	908 aa		10.76	□□□□□ -0.69
RRP40	YOL142W	YOL036W	Q08206	761 aa		10.74	□□□□□ -0.69
RRP40	YOL142W	PTC3	P34221	468 aa	Known RBP	10.73	□□□□□ -0.69
RRP40	YOL142W	NOP53	Q12080	455 aa	Known RBP	10.72	□□□□□ -0.69
RRP40	YOL142W	SET4	P42948	560 aa		10.7	□□□□□ -0.7
RRP40	YOL142W	MSB4	Q12317	492 aa		10.7	□□□□□ -0.7
RRP40	YOL142W	GYP5	Q12344	894 aa		10.68	□□□□□ -0.7
RRP40	YOL142W	SPP1	Q03012	353 aa		10.66	□□□□□ -0.7
RRP40	YOL142W	GRE2	Q12068	342 aa	Known RBP	10.65	□□□□□ -0.7
RRP40	YOL142W	TIF11	P38912	153 aa	Known RBP	10.64	□□□□□ -0.71
RRP40	YOL142W	ATH1	P48016	1211 aa		10.62	□□□□□ -0.71
RRP40	YOL142W	ABP1	P15891	592 aa	Known RBP	10.6	□□□□□ -0.71
RRP40	YOL142W	IFH1	P39520	1085 aa		10.6	□□□□□ -0.71
RRP40	YOL142W	SAS10	Q12136	610 aa	Predicted RBP	10.6	□□□□□ -0.71
RRP40	YOL142W	GUT1	P32190	709 aa		10.59	□□□□□ -0.71
RRP40	YOL142W	EAP1	P36041	632 aa	Known RBP	10.59	□□□□□ -0.71
RRP40	YOL142W	YPR148C	Q06523	435 aa		10.59	□□□□□ -0.71
RRP40	YOL142W	DCW1	P36091	449 aa		10.58	□□□□□ -0.72
RRP40	YOL142W	ULI1	P43604	169 aa		10.58	□□□□□ -0.72
RRP40	YOL142W	TRP5	P00931	707 aa	Known RBP	10.54	□□□□□ -0.72
RRP40	YOL142W	HTA1	P04911	132 aa	Known RBP	10.54	□□□□□ -0.72
RRP40	YOL142W	HTA2	P04912	132 aa		10.54	□□□□□ -0.72

Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms