RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 ARHGAP35Q9NRY4 1499 aa10.91□□□□□ -0.66
SMG1-215ENST00000568239 PBRM1Q86U86 1689 aa10.91□□□□□ -0.66
SMG1-215ENST00000568239 GRIN2BQ13224 1484 aa10.9□□□□□ -0.66
SMG1-215ENST00000568239 ATP1B4Q9UN42 357 aaPredicted RBP10.88□□□□□ -0.67
SMG1-215ENST00000568239 FHAD1B1AJZ9 1412 aa10.87□□□□□ -0.67
SMG1-215ENST00000568239 FBLN2P98095 1184 aa10.87□□□□□ -0.67
SMG1-215ENST00000568239 CTTNBP2Q8WZ74 1663 aa10.87□□□□□ -0.67
SMG1-215ENST00000568239 EIF4G3O43432 1585 aaKnown RBP10.87□□□□□ -0.67
SMG1-215ENST00000568239 SNAPC4Q5SXM2 1469 aa10.85□□□□□ -0.67
SMG1-215ENST00000568239 ADAMTS12P58397 1594 aa10.84□□□□□ -0.67
SMG1-215ENST00000568239 FHOD3Q2V2M9 1422 aa10.84□□□□□ -0.67
SMG1-215ENST00000568239 CHMP7Q8WUX9 453 aaPredicted RBP10.83□□□□□ -0.68
SMG1-215ENST00000568239 KANK4Q5T7N3 995 aaPredicted RBP10.81□□□□□ -0.68
SMG1-215ENST00000568239 HRCP23327 699 aa10.81□□□□□ -0.68
SMG1-215ENST00000568239 EFCAB5A4FU69 1503 aa10.79□□□□□ -0.68
SMG1-215ENST00000568239 MAGI1Q96QZ7 1491 aaPredicted RBP10.78□□□□□ -0.68
SMG1-215ENST00000568239 GRIN2AQ12879 1464 aa10.77□□□□□ -0.69
SMG1-215ENST00000568239 IQGAP2Q13576 1575 aa10.77□□□□□ -0.69
SMG1-215ENST00000568239 HNRNPUL2Q1KMD3 747 aaKnown RBP10.76□□□□□ -0.69
SMG1-215ENST00000568239 SYNJ2O15056 1496 aa10.75□□□□□ -0.69
SMG1-215ENST00000568239 FMN1Q68DA7 1419 aa10.75□□□□□ -0.69
SMG1-215ENST00000568239 PCF11O94913 1555 aaKnown RBP10.75□□□□□ -0.69
SMG1-215ENST00000568239 SAMD9Q5K651 1589 aa10.73□□□□□ -0.69
SMG1-215ENST00000568239 KIAA0586Q9BVV6 1533 aa10.72□□□□□ -0.69
SMG1-215ENST00000568239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.72□□□□□ -0.69
SMG1-215ENST00000568239 TIAM1Q13009 1591 aa10.72□□□□□ -0.69
SMG1-215ENST00000568239 ARID3CA6NKF2 412 aa10.71□□□□□ -0.69
SMG1-215ENST00000568239 CASKIN1Q8WXD9 1431 aa10.71□□□□□ -0.69
SMG1-215ENST00000568239 FYCO1Q9BQS8 1478 aa10.71□□□□□ -0.7
SMG1-215ENST00000568239 CEP170Q5SW79 1584 aa10.69□□□□□ -0.7
SMG1-215ENST00000568239 CCER1Q8TC90 406 aaPredicted RBP10.69□□□□□ -0.7
SMG1-215ENST00000568239 LRRC9Q6ZRR7 1453 aa10.68□□□□□ -0.7
SMG1-215ENST00000568239 JPH4Q96JJ6 628 aa10.68□□□□□ -0.7
SMG1-215ENST00000568239 ITGAEP38570 1179 aa10.68□□□□□ -0.7
SMG1-215ENST00000568239 UGGT2Q9NYU1 1516 aa10.67□□□□□ -0.7
SMG1-215ENST00000568239 MAP3K1Q13233 1512 aa10.67□□□□□ -0.7
SMG1-215ENST00000568239 MTUS2Q5JR59 1369 aa10.66□□□□□ -0.7
SMG1-215ENST00000568239 NUP160Q12769 1436 aa10.66□□□□□ -0.7
SMG1-215ENST00000568239 CFAP43Q8NDM7 1665 aa10.65□□□□□ -0.7
SMG1-215ENST00000568239 DISP1Q96F81 1524 aa10.65□□□□□ -0.7
SMG1-215ENST00000568239 KIAA0556O60303 1618 aa10.64□□□□□ -0.71
SMG1-215ENST00000568239 CCNB3Q8WWL7 1395 aa10.63□□□□□ -0.71
SMG1-215ENST00000568239 FAM50AQ14320 339 aaKnown RBP10.63□□□□□ -0.71
SMG1-215ENST00000568239 CARMIL2Q6F5E8 1435 aa10.63□□□□□ -0.71
SMG1-215ENST00000568239 CHD1O14646 1710 aa10.63□□□□□ -0.71
SMG1-215ENST00000568239 ZEB1P37275 1124 aaPredicted RBP10.62□□□□□ -0.71
SMG1-215ENST00000568239 PHLDB1Q86UU1 1377 aa10.62□□□□□ -0.71
SMG1-215ENST00000568239 LRRIQ1Q96JM4 1722 aa10.62□□□□□ -0.71
SMG1-215ENST00000568239 RRBP1Q9P2E9 1410 aaKnown RBP10.61□□□□□ -0.71
SMG1-215ENST00000568239 HECW1Q76N89 1606 aa10.6□□□□□ -0.71
SMG1-215ENST00000568239 CDK13Q14004 1512 aaKnown RBP10.59□□□□□ -0.71
SMG1-215ENST00000568239 CCDC18Q5T9S5 1454 aa10.59□□□□□ -0.71
SMG1-215ENST00000568239 EPRSP07814 1512 aaKnown RBP10.58□□□□□ -0.72
SMG1-215ENST00000568239 PRG4Q92954 1404 aaPredicted RBP10.58□□□□□ -0.72
SMG1-215ENST00000568239 PLB1Q6P1J6 1458 aa10.57□□□□□ -0.72
SMG1-215ENST00000568239 RAPGEF6Q8TEU7 1601 aa10.56□□□□□ -0.72
SMG1-215ENST00000568239 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
SMG1-215ENST00000568239 CDK11AQ9UQ88 783 aaPredicted RBP10.55□□□□□ -0.72
SMG1-215ENST00000568239 MAGI3Q5TCQ9 1506 aa10.55□□□□□ -0.72
SMG1-215ENST00000568239 EHBP1L1Q8N3D4 1523 aa10.55□□□□□ -0.72
SMG1-215ENST00000568239 NUP153P49790 1475 aaKnown RBP10.54□□□□□ -0.72
SMG1-215ENST00000568239 SUPT6HQ7KZ85 1726 aaKnown RBP10.54□□□□□ -0.72
SMG1-215ENST00000568239 PTPRGP23470 1445 aa10.53□□□□□ -0.72
SMG1-215ENST00000568239 FGD6Q6ZV73 1430 aa10.52□□□□□ -0.73
SMG1-215ENST00000568239 MYOM3Q5VTT5 1437 aa10.5□□□□□ -0.73
SMG1-215ENST00000568239 PLEKHD1A6NEE1 506 aa10.48□□□□□ -0.73
SMG1-215ENST00000568239 ERCC6L2Q5T890 1561 aa10.48□□□□□ -0.73
SMG1-215ENST00000568239 SHROOM2Q13796 1616 aa10.46□□□□□ -0.73
SMG1-215ENST00000568239 ABCA8O94911 1581 aa10.46□□□□□ -0.73
SMG1-215ENST00000568239 RAB3GAP2Q9H2M9 1393 aa10.46□□□□□ -0.74
SMG1-215ENST00000568239 TROQ12816 1431 aaPredicted RBP10.45□□□□□ -0.74
SMG1-215ENST00000568239 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.45□□□□□ -0.74
SMG1-215ENST00000568239 ATP10BO94823 1461 aa10.45□□□□□ -0.74
SMG1-215ENST00000568239 CHIC2Q9UKJ5 165 aa10.45□□□□□ -0.74
SMG1-215ENST00000568239 ARHGEF11O15085 1522 aa10.45□□□□□ -0.74
SMG1-215ENST00000568239 CLASP1Q7Z460 1538 aa10.45□□□□□ -0.74
SMG1-215ENST00000568239 PTPN23Q9H3S7 1636 aa10.45□□□□□ -0.74
SMG1-215ENST00000568239 ZNF777Q9ULD5 760 aaPredicted RBP10.44□□□□□ -0.74
SMG1-215ENST00000568239 UACAQ9BZF9 1416 aa10.44□□□□□ -0.74
SMG1-215ENST00000568239 SETD5Q9C0A6 1442 aa10.44□□□□□ -0.74
SMG1-215ENST00000568239 OSCARQ8IYS5 282 aa10.44□□□□□ -0.74
SMG1-215ENST00000568239 DHX57Q6P158 1386 aaKnown RBP10.43□□□□□ -0.74
SMG1-215ENST00000568239 CFDP1Q9UEE9 299 aaPredicted RBP10.43□□□□□ -0.74
SMG1-215ENST00000568239 ZNF644Q9H582 1327 aaPredicted RBP10.42□□□□□ -0.74
SMG1-215ENST00000568239 PTPRKQ15262 1439 aa10.41□□□□□ -0.74
SMG1-215ENST00000568239 MIA2Q96PC5 1412 aa10.41□□□□□ -0.74
SMG1-215ENST00000568239 KIF14Q15058 1648 aa10.41□□□□□ -0.74
SMG1-215ENST00000568239 RRP7BPQ9NSQ0 103 aa10.41□□□□□ -0.74
SMG1-215ENST00000568239 KCNH8Q96L42 1107 aa10.4□□□□□ -0.75
SMG1-215ENST00000568239 TCOF1Q13428 1488 aaKnown RBP10.38□□□□□ -0.75
SMG1-215ENST00000568239 ABCC2Q92887 1545 aa10.38□□□□□ -0.75
SMG1-215ENST00000568239 GPATCH8Q9UKJ3 1502 aaKnown RBP10.37□□□□□ -0.75
SMG1-215ENST00000568239 ADCY10Q96PN6 1610 aa10.36□□□□□ -0.75
SMG1-215ENST00000568239 CLSPNQ9HAW4 1339 aa10.36□□□□□ -0.75
SMG1-215ENST00000568239 ITSN2Q9NZM3 1697 aa10.35□□□□□ -0.75
SMG1-215ENST00000568239 HFM1A2PYH4 1435 aa10.35□□□□□ -0.75
SMG1-215ENST00000568239 NAIPQ13075 1403 aa10.34□□□□□ -0.75
SMG1-215ENST00000568239 CAMSAP2Q08AD1 1489 aa10.34□□□□□ -0.75
SMG1-215ENST00000568239 DAPK1P53355 1430 aa10.34□□□□□ -0.75
SMG1-215ENST00000568239 TRIM52Q96A61 297 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms