RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 NISCHQ9Y2I1 1504 aa15.67■□□□□ 0.1
SMG1-215ENST00000568239 CCDC180Q9P1Z9 1646 aa13.56□□□□□ -0.24
SMG1-215ENST00000568239 DCAF8L2P0C7V8 631 aa13.2□□□□□ -0.3
SMG1-215ENST00000568239 ZCCHC6Q5VYS8 1495 aaKnown RBP13.16□□□□□ -0.3
SMG1-215ENST00000568239 SHROOM4Q9ULL8 1493 aa13.04□□□□□ -0.32
SMG1-215ENST00000568239 ABCC9O60706 1549 aa12.96□□□□□ -0.34
SMG1-215ENST00000568239 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
SMG1-215ENST00000568239 MYO15BQ96JP2 1530 aa12.67□□□□□ -0.38
SMG1-215ENST00000568239 NACADO15069 1562 aa12.66□□□□□ -0.38
SMG1-215ENST00000568239 SCRIBQ14160 1630 aa12.62□□□□□ -0.39
SMG1-215ENST00000568239 SUPT5HO00267 1087 aaKnown RBP12.6□□□□□ -0.39
SMG1-215ENST00000568239 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
SMG1-215ENST00000568239 UNC13AQ9UPW8 1703 aa12.31□□□□□ -0.44
SMG1-215ENST00000568239 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
SMG1-215ENST00000568239 CECR2Q9BXF3 1484 aa12.24□□□□□ -0.45
SMG1-215ENST00000568239 AEBP2Q6ZN18 517 aaPredicted RBP12.23□□□□□ -0.45
SMG1-215ENST00000568239 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.45
SMG1-215ENST00000568239 BICRAQ9NZM4 1560 aa12.16□□□□□ -0.46
SMG1-215ENST00000568239 CHIC1Q5VXU3 224 aa12.15□□□□□ -0.46
SMG1-215ENST00000568239 MROH2BQ7Z745 1585 aa12.15□□□□□ -0.47
SMG1-215ENST00000568239 BAZ1AQ9NRL2 1556 aaPredicted RBP12.1□□□□□ -0.47
SMG1-215ENST00000568239 WIZO95785 1651 aa12.07□□□□□ -0.48
SMG1-215ENST00000568239 SMARCA4P51532 1647 aa12.03□□□□□ -0.48
SMG1-215ENST00000568239 TOP2AP11388 1531 aaKnown RBP11.88□□□□□ -0.51
SMG1-215ENST00000568239 ATAD2BQ9ULI0 1458 aa11.84□□□□□ -0.51
SMG1-215ENST00000568239 EIF4G1Q04637 1599 aaKnown RBP11.83□□□□□ -0.52
SMG1-215ENST00000568239 PEG3Q9GZU2 1588 aa11.82□□□□□ -0.52
SMG1-215ENST00000568239 CCDC88BA6NC98 1476 aa11.81□□□□□ -0.52
SMG1-215ENST00000568239 SMARCA2P51531 1590 aa11.81□□□□□ -0.52
SMG1-215ENST00000568239 BAZ1BQ9UIG0 1483 aaKnown RBP11.81□□□□□ -0.52
SMG1-215ENST00000568239 TRIM41Q8WV44 630 aa11.78□□□□□ -0.52
SMG1-215ENST00000568239 NCAPD3P42695 1498 aa11.69□□□□□ -0.54
SMG1-215ENST00000568239 CC2D2AQ9P2K1 1620 aa11.66□□□□□ -0.54
SMG1-215ENST00000568239 HMGXB3Q12766 1538 aa11.66□□□□□ -0.54
SMG1-215ENST00000568239 FAM9AQ8IZU1 332 aaPredicted RBP11.65□□□□□ -0.54
SMG1-215ENST00000568239 ABCC8Q09428 1581 aa11.63□□□□□ -0.55
SMG1-215ENST00000568239 LOC105371045A0A1W2PR82 267 aa11.61□□□□□ -0.55
SMG1-215ENST00000568239 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
SMG1-215ENST00000568239 WRNQ14191 1432 aaPredicted RBP eCLIP11.52□□□□□ -0.57
SMG1-215ENST00000568239 CFTRP13569 1480 aa11.47□□□□□ -0.57
SMG1-215ENST00000568239 CADPSQ9ULU8 1353 aa11.45□□□□□ -0.58
SMG1-215ENST00000568239 DNAJC5BQ9UF47 199 aa11.45□□□□□ -0.58
SMG1-215ENST00000568239 SYNJ1O43426 1573 aa11.45□□□□□ -0.58
SMG1-215ENST00000568239 SOGA1O94964 1423 aa11.43□□□□□ -0.58
SMG1-215ENST00000568239 RUSC2Q8N2Y8 1516 aa11.38□□□□□ -0.59
SMG1-215ENST00000568239 NESP48681 1621 aa11.38□□□□□ -0.59
SMG1-215ENST00000568239 PRDM2Q13029 1718 aa11.36□□□□□ -0.59
SMG1-215ENST00000568239 TOP2BQ02880 1626 aa11.36□□□□□ -0.59
SMG1-215ENST00000568239 CSRNP3Q8WYN3 585 aa11.36□□□□□ -0.59
SMG1-215ENST00000568239 CUX1P39880 1505 aa11.34□□□□□ -0.59
SMG1-215ENST00000568239 FANCD2Q9BXW9 1451 aa11.34□□□□□ -0.59
SMG1-215ENST00000568239 EEA1Q15075 1411 aa11.33□□□□□ -0.6
SMG1-215ENST00000568239 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
SMG1-215ENST00000568239 UBTFP17480 764 aaKnown RBP11.31□□□□□ -0.6
SMG1-215ENST00000568239 LAMC3Q9Y6N6 1575 aa11.29□□□□□ -0.6
SMG1-215ENST00000568239 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
SMG1-215ENST00000568239 PDS5BQ9NTI5 1447 aa11.25□□□□□ -0.61
SMG1-215ENST00000568239 FGD5Q6ZNL6 1462 aa11.23□□□□□ -0.61
SMG1-215ENST00000568239 GOLGA3Q08378 1498 aa11.22□□□□□ -0.61
SMG1-215ENST00000568239 KIF27Q86VH2 1401 aa11.22□□□□□ -0.61
SMG1-215ENST00000568239 RANGAP1P46060 587 aaPredicted RBP11.2□□□□□ -0.62
SMG1-215ENST00000568239 TOPBP1Q92547 1522 aa11.2□□□□□ -0.62
SMG1-215ENST00000568239 CUX2O14529 1486 aa11.2□□□□□ -0.62
SMG1-215ENST00000568239 DNMBPQ6XZF7 1577 aa11.2□□□□□ -0.62
SMG1-215ENST00000568239 KIF21AQ7Z4S6 1674 aa11.19□□□□□ -0.62
SMG1-215ENST00000568239 TNIKQ9UKE5 1360 aa11.19□□□□□ -0.62
SMG1-215ENST00000568239 RAPGEF2Q9Y4G8 1499 aa11.18□□□□□ -0.62
SMG1-215ENST00000568239 CEP162Q5TB80 1403 aa11.17□□□□□ -0.62
SMG1-215ENST00000568239 RAD54L2Q9Y4B4 1467 aa11.17□□□□□ -0.62
SMG1-215ENST00000568239 URB2Q14146 1524 aaKnown RBP11.17□□□□□ -0.62
SMG1-215ENST00000568239 PCGF6Q9BYE7 350 aa11.17□□□□□ -0.62
SMG1-215ENST00000568239 KIF21BO75037 1637 aa11.17□□□□□ -0.62
SMG1-215ENST00000568239 POLA1P09884 1462 aaPredicted RBP11.16□□□□□ -0.62
SMG1-215ENST00000568239 PPARGC1BQ86YN6 1023 aaKnown RBP11.14□□□□□ -0.63
SMG1-215ENST00000568239 PRXQ9BXM0 1461 aa11.11□□□□□ -0.63
SMG1-215ENST00000568239 IGF1RP08069 1367 aa11.11□□□□□ -0.63
SMG1-215ENST00000568239 ERCC6Q03468 1493 aa11.11□□□□□ -0.63
SMG1-215ENST00000568239 ABCA10Q8WWZ4 1543 aa11.09□□□□□ -0.63
SMG1-215ENST00000568239 TDRD9Q8NDG6 1382 aaKnown RBP11.08□□□□□ -0.64
SMG1-215ENST00000568239 MRC2Q9UBG0 1479 aa11.08□□□□□ -0.64
SMG1-215ENST00000568239 CARMIL1Q5VZK9 1371 aa11.08□□□□□ -0.64
SMG1-215ENST00000568239 ERICH3Q5RHP9 1530 aa11.08□□□□□ -0.64
SMG1-215ENST00000568239 CLIP1P30622 1438 aa11.08□□□□□ -0.64
SMG1-215ENST00000568239 TTBK1Q5TCY1 1321 aaPredicted RBP11.07□□□□□ -0.64
SMG1-215ENST00000568239 TRIM26Q12899 539 aaPredicted RBP11.07□□□□□ -0.64
SMG1-215ENST00000568239 GAPVD1Q14C86 1478 aa11.02□□□□□ -0.65
SMG1-215ENST00000568239 WDR97A6NE52 1622 aa11.01□□□□□ -0.65
SMG1-215ENST00000568239 PHF23Q9BUL5 403 aaPredicted RBP11□□□□□ -0.65
SMG1-215ENST00000568239 TARBP1Q13395 1621 aaKnown RBP10.99□□□□□ -0.65
SMG1-215ENST00000568239 WDR62O43379 1518 aa10.99□□□□□ -0.65
SMG1-215ENST00000568239 AQRO60306 1485 aaKnown RBP eCLIP10.98□□□□□ -0.65
SMG1-215ENST00000568239 APLP2Q06481 763 aa10.98□□□□□ -0.65
SMG1-215ENST00000568239 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
SMG1-215ENST00000568239 CUL7Q14999 1698 aa10.96□□□□□ -0.65
SMG1-215ENST00000568239 VPS8Q8N3P4 1428 aa10.96□□□□□ -0.66
SMG1-215ENST00000568239 IFT140Q96RY7 1462 aa10.95□□□□□ -0.66
SMG1-215ENST00000568239 ZNF608Q9ULD9 1512 aaPredicted RBP10.95□□□□□ -0.66
SMG1-215ENST00000568239 P3H3Q8IVL6 736 aa10.94□□□□□ -0.66
SMG1-215ENST00000568239 THOC2Q8NI27 1593 aaKnown RBP10.94□□□□□ -0.66
SMG1-215ENST00000568239 ARAP1Q96P48 1450 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 682.7 ms