RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 GRIN2BQ13224 1484 aa14.48□□□□□ -0.09
LINC00838-201ENST00000562956 FHAD1B1AJZ9 1412 aa14.47□□□□□ -0.09
LINC00838-201ENST00000562956 P3H3Q8IVL6 736 aa14.46□□□□□ -0.09
LINC00838-201ENST00000562956 CTTNBP2Q8WZ74 1663 aa14.45□□□□□ -0.1
LINC00838-201ENST00000562956 ADAMTS12P58397 1594 aa14.44□□□□□ -0.1
LINC00838-201ENST00000562956 KANK4Q5T7N3 995 aaPredicted RBP14.44□□□□□ -0.1
LINC00838-201ENST00000562956 FHOD3Q2V2M9 1422 aa14.42□□□□□ -0.1
LINC00838-201ENST00000562956 EFCAB5A4FU69 1503 aa14.42□□□□□ -0.1
LINC00838-201ENST00000562956 EIF4G3O43432 1585 aaKnown RBP14.41□□□□□ -0.1
LINC00838-201ENST00000562956 SNAPC4Q5SXM2 1469 aa14.39□□□□□ -0.11
LINC00838-201ENST00000562956 PCF11O94913 1555 aaKnown RBP14.35□□□□□ -0.11
LINC00838-201ENST00000562956 SAMD9Q5K651 1589 aa14.35□□□□□ -0.11
LINC00838-201ENST00000562956 TIAM1Q13009 1591 aa14.33□□□□□ -0.12
LINC00838-201ENST00000562956 MAP3K1Q13233 1512 aa14.33□□□□□ -0.12
LINC00838-201ENST00000562956 ATP1B4Q9UN42 357 aaPredicted RBP14.32□□□□□ -0.12
LINC00838-201ENST00000562956 MAGI1Q96QZ7 1491 aaPredicted RBP14.32□□□□□ -0.12
LINC00838-201ENST00000562956 IQGAP2Q13576 1575 aa14.32□□□□□ -0.12
LINC00838-201ENST00000562956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
LINC00838-201ENST00000562956 FMN1Q68DA7 1419 aa14.32□□□□□ -0.12
LINC00838-201ENST00000562956 CASKIN1Q8WXD9 1431 aa14.32□□□□□ -0.12
LINC00838-201ENST00000562956 GRIN2AQ12879 1464 aa14.31□□□□□ -0.12
LINC00838-201ENST00000562956 FYCO1Q9BQS8 1478 aa14.31□□□□□ -0.12
LINC00838-201ENST00000562956 HNRNPUL2Q1KMD3 747 aaKnown RBP14.3□□□□□ -0.12
LINC00838-201ENST00000562956 CHMP7Q8WUX9 453 aaPredicted RBP14.28□□□□□ -0.12
LINC00838-201ENST00000562956 SYNJ2O15056 1496 aa14.28□□□□□ -0.12
LINC00838-201ENST00000562956 LRRC9Q6ZRR7 1453 aa14.28□□□□□ -0.12
LINC00838-201ENST00000562956 ZEB1P37275 1124 aaPredicted RBP14.28□□□□□ -0.12
LINC00838-201ENST00000562956 KIAA0586Q9BVV6 1533 aa14.28□□□□□ -0.12
LINC00838-201ENST00000562956 FBLN2P98095 1184 aa14.27□□□□□ -0.13
LINC00838-201ENST00000562956 CFAP43Q8NDM7 1665 aa14.25□□□□□ -0.13
LINC00838-201ENST00000562956 RRBP1Q9P2E9 1410 aaKnown RBP14.25□□□□□ -0.13
LINC00838-201ENST00000562956 UGGT2Q9NYU1 1516 aa14.25□□□□□ -0.13
LINC00838-201ENST00000562956 CCER1Q8TC90 406 aaPredicted RBP14.25□□□□□ -0.13
LINC00838-201ENST00000562956 CEP170Q5SW79 1584 aa14.23□□□□□ -0.13
LINC00838-201ENST00000562956 CCNB3Q8WWL7 1395 aa14.21□□□□□ -0.14
LINC00838-201ENST00000562956 DISP1Q96F81 1524 aa14.21□□□□□ -0.14
LINC00838-201ENST00000562956 PHLDB1Q86UU1 1377 aa14.2□□□□□ -0.14
LINC00838-201ENST00000562956 NUP160Q12769 1436 aa14.2□□□□□ -0.14
LINC00838-201ENST00000562956 KIAA0556O60303 1618 aa14.18□□□□□ -0.14
LINC00838-201ENST00000562956 LRRIQ1Q96JM4 1722 aa14.17□□□□□ -0.14
LINC00838-201ENST00000562956 MTUS2Q5JR59 1369 aa14.15□□□□□ -0.14
LINC00838-201ENST00000562956 JPH4Q96JJ6 628 aa14.14□□□□□ -0.15
LINC00838-201ENST00000562956 HECW1Q76N89 1606 aa14.13□□□□□ -0.15
LINC00838-201ENST00000562956 ITGAEP38570 1179 aa14.12□□□□□ -0.15
LINC00838-201ENST00000562956 CCDC18Q5T9S5 1454 aa14.12□□□□□ -0.15
LINC00838-201ENST00000562956 EPRSP07814 1512 aaKnown RBP14.11□□□□□ -0.15
LINC00838-201ENST00000562956 ARID3CA6NKF2 412 aa14.11□□□□□ -0.15
LINC00838-201ENST00000562956 MAGI3Q5TCQ9 1506 aa14.1□□□□□ -0.15
LINC00838-201ENST00000562956 CDK13Q14004 1512 aaKnown RBP14.09□□□□□ -0.15
LINC00838-201ENST00000562956 FAM50AQ14320 339 aaKnown RBP14.09□□□□□ -0.15
LINC00838-201ENST00000562956 EHBP1L1Q8N3D4 1523 aa14.08□□□□□ -0.16
LINC00838-201ENST00000562956 CARMIL2Q6F5E8 1435 aa14.08□□□□□ -0.16
LINC00838-201ENST00000562956 NCOA2Q15596 1464 aa14.08□□□□□ -0.16
LINC00838-201ENST00000562956 NUP153P49790 1475 aaKnown RBP14.07□□□□□ -0.16
LINC00838-201ENST00000562956 FGD6Q6ZV73 1430 aa14.06□□□□□ -0.16
LINC00838-201ENST00000562956 CHD1O14646 1710 aa14.05□□□□□ -0.16
LINC00838-201ENST00000562956 RAPGEF6Q8TEU7 1601 aa14.05□□□□□ -0.16
LINC00838-201ENST00000562956 PLB1Q6P1J6 1458 aa14.04□□□□□ -0.16
LINC00838-201ENST00000562956 SUPT6HQ7KZ85 1726 aaKnown RBP14.04□□□□□ -0.16
LINC00838-201ENST00000562956 ARHGEF11O15085 1522 aa14.03□□□□□ -0.16
LINC00838-201ENST00000562956 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.03□□□□□ -0.16
LINC00838-201ENST00000562956 MYOM3Q5VTT5 1437 aa14.03□□□□□ -0.16
LINC00838-201ENST00000562956 PRG4Q92954 1404 aaPredicted RBP14.02□□□□□ -0.16
LINC00838-201ENST00000562956 DHX57Q6P158 1386 aaKnown RBP14□□□□□ -0.17
LINC00838-201ENST00000562956 RAB3GAP2Q9H2M9 1393 aa13.98□□□□□ -0.17
LINC00838-201ENST00000562956 SETD5Q9C0A6 1442 aa13.97□□□□□ -0.17
LINC00838-201ENST00000562956 CDK11AQ9UQ88 783 aaPredicted RBP13.96□□□□□ -0.18
LINC00838-201ENST00000562956 ABCA8O94911 1581 aa13.96□□□□□ -0.18
LINC00838-201ENST00000562956 PTPRGP23470 1445 aa13.95□□□□□ -0.18
LINC00838-201ENST00000562956 SHROOM2Q13796 1616 aa13.95□□□□□ -0.18
LINC00838-201ENST00000562956 PTPRKQ15262 1439 aa13.95□□□□□ -0.18
LINC00838-201ENST00000562956 PTPN23Q9H3S7 1636 aa13.94□□□□□ -0.18
LINC00838-201ENST00000562956 PELP1Q8IZL8 1130 aaKnown RBP13.93□□□□□ -0.18
LINC00838-201ENST00000562956 TROQ12816 1431 aaPredicted RBP13.92□□□□□ -0.18
LINC00838-201ENST00000562956 TCOF1Q13428 1488 aaKnown RBP13.92□□□□□ -0.18
LINC00838-201ENST00000562956 CLSPNQ9HAW4 1339 aa13.92□□□□□ -0.18
LINC00838-201ENST00000562956 MIA2Q96PC5 1412 aa13.92□□□□□ -0.18
LINC00838-201ENST00000562956 ATP10BO94823 1461 aa13.91□□□□□ -0.18
LINC00838-201ENST00000562956 ERCC6L2Q5T890 1561 aa13.91□□□□□ -0.18
LINC00838-201ENST00000562956 CLASP1Q7Z460 1538 aa13.9□□□□□ -0.18
LINC00838-201ENST00000562956 HFM1A2PYH4 1435 aa13.87□□□□□ -0.19
LINC00838-201ENST00000562956 PLEKHD1A6NEE1 506 aa13.87□□□□□ -0.19
LINC00838-201ENST00000562956 UACAQ9BZF9 1416 aa13.86□□□□□ -0.19
LINC00838-201ENST00000562956 KIF14Q15058 1648 aa13.86□□□□□ -0.19
LINC00838-201ENST00000562956 ZNF644Q9H582 1327 aaPredicted RBP13.85□□□□□ -0.19
LINC00838-201ENST00000562956 CHIC2Q9UKJ5 165 aa13.84□□□□□ -0.19
LINC00838-201ENST00000562956 NAIPQ13075 1403 aa13.84□□□□□ -0.19
LINC00838-201ENST00000562956 MAPKBP1O60336 1514 aa13.84□□□□□ -0.19
LINC00838-201ENST00000562956 ADCY10Q96PN6 1610 aa13.84□□□□□ -0.19
LINC00838-201ENST00000562956 GPATCH8Q9UKJ3 1502 aaKnown RBP13.83□□□□□ -0.19
LINC00838-201ENST00000562956 RRP7BPQ9NSQ0 103 aa13.82□□□□□ -0.2
LINC00838-201ENST00000562956 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
LINC00838-201ENST00000562956 SCAF1Q9H7N4 1312 aaKnown RBP13.82□□□□□ -0.2
LINC00838-201ENST00000562956 DAPK1P53355 1430 aa13.8□□□□□ -0.2
LINC00838-201ENST00000562956 ABCC10Q5T3U5 1492 aa13.8□□□□□ -0.2
LINC00838-201ENST00000562956 ABCC2Q92887 1545 aa13.8□□□□□ -0.2
LINC00838-201ENST00000562956 ABCC5O15440 1437 aa13.79□□□□□ -0.2
LINC00838-201ENST00000562956 CAMSAP2Q08AD1 1489 aa13.78□□□□□ -0.2
LINC00838-201ENST00000562956 ZNF777Q9ULD5 760 aaPredicted RBP13.78□□□□□ -0.2
LINC00838-201ENST00000562956 ITSN2Q9NZM3 1697 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms