RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 NISCHQ9Y2I1 1504 aa20.92■□□□□ 0.94
LINC00838-201ENST00000562956 CCDC180Q9P1Z9 1646 aa18.08■□□□□ 0.48
LINC00838-201ENST00000562956 ZCCHC6Q5VYS8 1495 aaKnown RBP17.6■□□□□ 0.41
LINC00838-201ENST00000562956 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
LINC00838-201ENST00000562956 SHROOM4Q9ULL8 1493 aa17.3■□□□□ 0.36
LINC00838-201ENST00000562956 DCAF1Q9Y4B6 1507 aa17.24■□□□□ 0.35
LINC00838-201ENST00000562956 ABCC9O60706 1549 aa17.1■□□□□ 0.33
LINC00838-201ENST00000562956 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
LINC00838-201ENST00000562956 NACADO15069 1562 aa16.84■□□□□ 0.29
LINC00838-201ENST00000562956 SCRIBQ14160 1630 aa16.76■□□□□ 0.27
LINC00838-201ENST00000562956 SUPT5HO00267 1087 aaKnown RBP16.72■□□□□ 0.27
LINC00838-201ENST00000562956 RB1CC1Q8TDY2 1594 aa16.66■□□□□ 0.26
LINC00838-201ENST00000562956 RSF1Q96T23 1441 aaPredicted RBP16.33■□□□□ 0.2
LINC00838-201ENST00000562956 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.2
LINC00838-201ENST00000562956 CECR2Q9BXF3 1484 aa16.31■□□□□ 0.2
LINC00838-201ENST00000562956 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
LINC00838-201ENST00000562956 MROH2BQ7Z745 1585 aa16.21■□□□□ 0.19
LINC00838-201ENST00000562956 BICRAQ9NZM4 1560 aa16.2■□□□□ 0.18
LINC00838-201ENST00000562956 BAZ1AQ9NRL2 1556 aaPredicted RBP16.12■□□□□ 0.17
LINC00838-201ENST00000562956 WIZO95785 1651 aa16.07■□□□□ 0.16
LINC00838-201ENST00000562956 CHIC1Q5VXU3 224 aa16.05■□□□□ 0.16
LINC00838-201ENST00000562956 SMARCA4P51532 1647 aa16.03■□□□□ 0.16
LINC00838-201ENST00000562956 TOP2AP11388 1531 aaKnown RBP15.87■□□□□ 0.13
LINC00838-201ENST00000562956 PEG3Q9GZU2 1588 aa15.81■□□□□ 0.12
LINC00838-201ENST00000562956 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
LINC00838-201ENST00000562956 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
LINC00838-201ENST00000562956 SMARCA2P51531 1590 aa15.74■□□□□ 0.11
LINC00838-201ENST00000562956 EIF4G1Q04637 1599 aaKnown RBP15.69■□□□□ 0.1
LINC00838-201ENST00000562956 BAZ1BQ9UIG0 1483 aaKnown RBP15.67■□□□□ 0.1
LINC00838-201ENST00000562956 TRIM41Q8WV44 630 aa15.66■□□□□ 0.1
LINC00838-201ENST00000562956 NCAPD3P42695 1498 aa15.58■□□□□ 0.08
LINC00838-201ENST00000562956 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
LINC00838-201ENST00000562956 LOC105371045A0A1W2PR82 267 aa15.5■□□□□ 0.07
LINC00838-201ENST00000562956 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
LINC00838-201ENST00000562956 FAM9AQ8IZU1 332 aaPredicted RBP15.44■□□□□ 0.06
LINC00838-201ENST00000562956 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
LINC00838-201ENST00000562956 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
LINC00838-201ENST00000562956 CFTRP13569 1480 aa15.29■□□□□ 0.04
LINC00838-201ENST00000562956 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
LINC00838-201ENST00000562956 EHMT2Q96KQ7 1210 aa15.27■□□□□ 0.03
LINC00838-201ENST00000562956 SOGA1O94964 1423 aa15.26■□□□□ 0.03
LINC00838-201ENST00000562956 CADPSQ9ULU8 1353 aa15.21■□□□□ 0.03
LINC00838-201ENST00000562956 RUSC2Q8N2Y8 1516 aa15.2■□□□□ 0.02
LINC00838-201ENST00000562956 TOP2BQ02880 1626 aa15.17■□□□□ 0.02
LINC00838-201ENST00000562956 EEA1Q15075 1411 aa15.16■□□□□ 0.02
LINC00838-201ENST00000562956 CSRNP3Q8WYN3 585 aa15.14■□□□□ 0.01
LINC00838-201ENST00000562956 CUX1P39880 1505 aa15.13■□□□□ 0.01
LINC00838-201ENST00000562956 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
LINC00838-201ENST00000562956 BIVM-ERCC5R4GMW8 1640 aa15.13■□□□□ 0.01
LINC00838-201ENST00000562956 PRDM2Q13029 1718 aa15.11■□□□□ 0.01
LINC00838-201ENST00000562956 NESP48681 1621 aa15.07■□□□□ 0
LINC00838-201ENST00000562956 FANCD2Q9BXW9 1451 aa15.05■□□□□ -0
LINC00838-201ENST00000562956 GOLGA3Q08378 1498 aa14.99□□□□□ -0.01
LINC00838-201ENST00000562956 TNIKQ9UKE5 1360 aa14.99□□□□□ -0.01
LINC00838-201ENST00000562956 LAMC3Q9Y6N6 1575 aa14.99□□□□□ -0.01
LINC00838-201ENST00000562956 CEP164Q9UPV0 1460 aa14.98□□□□□ -0.01
LINC00838-201ENST00000562956 UBTFP17480 764 aaKnown RBP14.98□□□□□ -0.01
LINC00838-201ENST00000562956 KIF21BO75037 1637 aa14.96□□□□□ -0.02
LINC00838-201ENST00000562956 CEP162Q5TB80 1403 aa14.95□□□□□ -0.02
LINC00838-201ENST00000562956 PCGF6Q9BYE7 350 aa14.94□□□□□ -0.02
LINC00838-201ENST00000562956 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
LINC00838-201ENST00000562956 KIF27Q86VH2 1401 aa14.93□□□□□ -0.02
LINC00838-201ENST00000562956 RAPGEF2Q9Y4G8 1499 aa14.92□□□□□ -0.02
LINC00838-201ENST00000562956 DNMBPQ6XZF7 1577 aa14.9□□□□□ -0.02
LINC00838-201ENST00000562956 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
LINC00838-201ENST00000562956 TOPBP1Q92547 1522 aa14.89□□□□□ -0.03
LINC00838-201ENST00000562956 PRXQ9BXM0 1461 aa14.88□□□□□ -0.03
LINC00838-201ENST00000562956 CUX2O14529 1486 aa14.88□□□□□ -0.03
LINC00838-201ENST00000562956 URB2Q14146 1524 aaKnown RBP14.86□□□□□ -0.03
LINC00838-201ENST00000562956 TRIM26Q12899 539 aaPredicted RBP14.85□□□□□ -0.03
LINC00838-201ENST00000562956 POLA1P09884 1462 aaPredicted RBP14.85□□□□□ -0.03
LINC00838-201ENST00000562956 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.03
LINC00838-201ENST00000562956 ERICH3Q5RHP9 1530 aa14.83□□□□□ -0.04
LINC00838-201ENST00000562956 IGF1RP08069 1367 aa14.82□□□□□ -0.04
LINC00838-201ENST00000562956 KIF21AQ7Z4S6 1674 aa14.81□□□□□ -0.04
LINC00838-201ENST00000562956 PPARGC1BQ86YN6 1023 aaKnown RBP14.79□□□□□ -0.04
LINC00838-201ENST00000562956 ABCA10Q8WWZ4 1543 aa14.79□□□□□ -0.04
LINC00838-201ENST00000562956 CLIP1P30622 1438 aa14.79□□□□□ -0.04
LINC00838-201ENST00000562956 RANGAP1P46060 587 aaPredicted RBP14.76□□□□□ -0.05
LINC00838-201ENST00000562956 CARMIL1Q5VZK9 1371 aa14.74□□□□□ -0.05
LINC00838-201ENST00000562956 MRC2Q9UBG0 1479 aa14.7□□□□□ -0.06
LINC00838-201ENST00000562956 WDR97A6NE52 1622 aa14.69□□□□□ -0.06
LINC00838-201ENST00000562956 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
LINC00838-201ENST00000562956 VPS8Q8N3P4 1428 aa14.66□□□□□ -0.06
LINC00838-201ENST00000562956 TARBP1Q13395 1621 aaKnown RBP14.64□□□□□ -0.07
LINC00838-201ENST00000562956 TTBK1Q5TCY1 1321 aaPredicted RBP14.64□□□□□ -0.07
LINC00838-201ENST00000562956 ABCA5Q8WWZ7 1642 aa14.64□□□□□ -0.07
LINC00838-201ENST00000562956 GAPVD1Q14C86 1478 aa14.63□□□□□ -0.07
LINC00838-201ENST00000562956 ARAP1Q96P48 1450 aa14.63□□□□□ -0.07
LINC00838-201ENST00000562956 ERCC6Q03468 1493 aa14.61□□□□□ -0.07
LINC00838-201ENST00000562956 WDR62O43379 1518 aa14.61□□□□□ -0.07
LINC00838-201ENST00000562956 HRCP23327 699 aa14.6□□□□□ -0.07
LINC00838-201ENST00000562956 CUL7Q14999 1698 aa14.6□□□□□ -0.07
LINC00838-201ENST00000562956 ARHGAP35Q9NRY4 1499 aa14.59□□□□□ -0.07
LINC00838-201ENST00000562956 AQRO60306 1485 aaKnown RBP eCLIP14.56□□□□□ -0.08
LINC00838-201ENST00000562956 IFT140Q96RY7 1462 aa14.54□□□□□ -0.08
LINC00838-201ENST00000562956 THOC2Q8NI27 1593 aaKnown RBP14.53□□□□□ -0.08
LINC00838-201ENST00000562956 APLP2Q06481 763 aa14.52□□□□□ -0.08
LINC00838-201ENST00000562956 ZNF608Q9ULD9 1512 aaPredicted RBP14.52□□□□□ -0.09
LINC00838-201ENST00000562956 PBRM1Q86U86 1689 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms