RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 WDR97A6NE52 1622 aa15.96■□□□□ 0.15
NEK9-205ENST00000555405 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
NEK9-205ENST00000555405 JPH4Q96JJ6 628 aa15.91■□□□□ 0.14
NEK9-205ENST00000555405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
NEK9-205ENST00000555405 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
NEK9-205ENST00000555405 CUL7Q14999 1698 aa15.88■□□□□ 0.13
NEK9-205ENST00000555405 SYNJ2O15056 1496 aa15.88■□□□□ 0.13
NEK9-205ENST00000555405 GRIN2AQ12879 1464 aa15.88■□□□□ 0.13
NEK9-205ENST00000555405 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
NEK9-205ENST00000555405 FHOD3Q2V2M9 1422 aa15.87■□□□□ 0.13
NEK9-205ENST00000555405 ADAMTS12P58397 1594 aa15.86■□□□□ 0.13
NEK9-205ENST00000555405 PCGF6Q9BYE7 350 aa15.86■□□□□ 0.13
NEK9-205ENST00000555405 OSCARQ8IYS5 282 aa15.83■□□□□ 0.12
NEK9-205ENST00000555405 ARHGAP35Q9NRY4 1499 aa15.81■□□□□ 0.12
NEK9-205ENST00000555405 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
NEK9-205ENST00000555405 KIAA0586Q9BVV6 1533 aa15.76■□□□□ 0.11
NEK9-205ENST00000555405 VPS8Q8N3P4 1428 aa15.74■□□□□ 0.11
NEK9-205ENST00000555405 KANK4Q5T7N3 995 aaPredicted RBP15.73■□□□□ 0.11
NEK9-205ENST00000555405 IQGAP2Q13576 1575 aa15.73■□□□□ 0.11
NEK9-205ENST00000555405 CEP170Q5SW79 1584 aa15.73■□□□□ 0.11
NEK9-205ENST00000555405 PRG4Q92954 1404 aaPredicted RBP15.72■□□□□ 0.11
NEK9-205ENST00000555405 CHD1O14646 1710 aa15.7■□□□□ 0.1
NEK9-205ENST00000555405 CARMIL2Q6F5E8 1435 aa15.69■□□□□ 0.1
NEK9-205ENST00000555405 NUP160Q12769 1436 aa15.69■□□□□ 0.1
NEK9-205ENST00000555405 CTTNBP2Q8WZ74 1663 aa15.68■□□□□ 0.1
NEK9-205ENST00000555405 ITGAEP38570 1179 aa15.67■□□□□ 0.1
NEK9-205ENST00000555405 TRIM26Q12899 539 aaPredicted RBP15.65■□□□□ 0.1
NEK9-205ENST00000555405 PTPRGP23470 1445 aa15.64■□□□□ 0.09
NEK9-205ENST00000555405 FMN1Q68DA7 1419 aa15.63■□□□□ 0.09
NEK9-205ENST00000555405 CYB5RLQ6IPT4 315 aa15.62■□□□□ 0.09
NEK9-205ENST00000555405 DISP1Q96F81 1524 aa15.6■□□□□ 0.09
NEK9-205ENST00000555405 KCNH8Q96L42 1107 aa15.59■□□□□ 0.09
NEK9-205ENST00000555405 MTUS2Q5JR59 1369 aa15.59■□□□□ 0.09
NEK9-205ENST00000555405 EFCAB5A4FU69 1503 aa15.58■□□□□ 0.08
NEK9-205ENST00000555405 PLB1Q6P1J6 1458 aa15.58■□□□□ 0.08
NEK9-205ENST00000555405 FAM50AQ14320 339 aaKnown RBP15.57■□□□□ 0.08
NEK9-205ENST00000555405 UGGT2Q9NYU1 1516 aa15.56■□□□□ 0.08
NEK9-205ENST00000555405 ERCC6L2Q5T890 1561 aa15.56■□□□□ 0.08
NEK9-205ENST00000555405 CDK11AQ9UQ88 783 aaPredicted RBP15.53■□□□□ 0.08
NEK9-205ENST00000555405 PLEKHD1A6NEE1 506 aa15.53■□□□□ 0.08
NEK9-205ENST00000555405 PCF11O94913 1555 aaKnown RBP15.53■□□□□ 0.08
NEK9-205ENST00000555405 KIAA0556O60303 1618 aa15.52■□□□□ 0.08
NEK9-205ENST00000555405 CASKIN1Q8WXD9 1431 aa15.52■□□□□ 0.08
NEK9-205ENST00000555405 NPM1P06748 294 aaKnown RBP eCLIP15.52■□□□□ 0.07
NEK9-205ENST00000555405 ZNF777Q9ULD5 760 aaPredicted RBP15.51■□□□□ 0.07
NEK9-205ENST00000555405 SAMD9Q5K651 1589 aa15.5■□□□□ 0.07
NEK9-205ENST00000555405 CDK13Q14004 1512 aaKnown RBP15.5■□□□□ 0.07
NEK9-205ENST00000555405 FYCO1Q9BQS8 1478 aa15.46■□□□□ 0.06
NEK9-205ENST00000555405 CLASP1Q7Z460 1538 aa15.43■□□□□ 0.06
NEK9-205ENST00000555405 UACAQ9BZF9 1416 aa15.43■□□□□ 0.06
NEK9-205ENST00000555405 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
NEK9-205ENST00000555405 LRRC9Q6ZRR7 1453 aa15.41■□□□□ 0.06
NEK9-205ENST00000555405 NUP153P49790 1475 aaKnown RBP15.41■□□□□ 0.06
NEK9-205ENST00000555405 TIAM1Q13009 1591 aa15.4■□□□□ 0.06
NEK9-205ENST00000555405 CHIC2Q9UKJ5 165 aa15.39■□□□□ 0.05
NEK9-205ENST00000555405 PHLDB1Q86UU1 1377 aa15.39■□□□□ 0.05
NEK9-205ENST00000555405 RAPGEF6Q8TEU7 1601 aa15.37■□□□□ 0.05
NEK9-205ENST00000555405 ATP10BO94823 1461 aa15.37■□□□□ 0.05
NEK9-205ENST00000555405 HECW1Q76N89 1606 aa15.36■□□□□ 0.05
NEK9-205ENST00000555405 CFDP1Q9UEE9 299 aaPredicted RBP15.36■□□□□ 0.05
NEK9-205ENST00000555405 ZNF644Q9H582 1327 aaPredicted RBP15.34■□□□□ 0.05
NEK9-205ENST00000555405 CCNB3Q8WWL7 1395 aa15.34■□□□□ 0.05
NEK9-205ENST00000555405 ARHGEF11O15085 1522 aa15.33■□□□□ 0.04
NEK9-205ENST00000555405 MYT1LQ9UL68 1186 aa15.33■□□□□ 0.04
NEK9-205ENST00000555405 CCDC18Q5T9S5 1454 aa15.33■□□□□ 0.04
NEK9-205ENST00000555405 SHROOM2Q13796 1616 aa15.32■□□□□ 0.04
NEK9-205ENST00000555405 NCOA2Q15596 1464 aa15.31■□□□□ 0.04
NEK9-205ENST00000555405 MAGI3Q5TCQ9 1506 aa15.3■□□□□ 0.04
NEK9-205ENST00000555405 ABCA8O94911 1581 aa15.28■□□□□ 0.04
NEK9-205ENST00000555405 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
NEK9-205ENST00000555405 TROQ12816 1431 aaPredicted RBP15.28■□□□□ 0.04
NEK9-205ENST00000555405 RRP7BPQ9NSQ0 103 aa15.27■□□□□ 0.04
NEK9-205ENST00000555405 LRRIQ1Q96JM4 1722 aa15.26■□□□□ 0.03
NEK9-205ENST00000555405 ABCC2Q92887 1545 aa15.26■□□□□ 0.03
NEK9-205ENST00000555405 HNRNPMP52272 730 aaKnown RBP eCLIP15.25■□□□□ 0.03
NEK9-205ENST00000555405 MAP3K1Q13233 1512 aa15.24■□□□□ 0.03
NEK9-205ENST00000555405 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
NEK9-205ENST00000555405 EHBP1L1Q8N3D4 1523 aa15.22■□□□□ 0.03
NEK9-205ENST00000555405 FAM69CQ0P6D2 419 aa15.22■□□□□ 0.03
NEK9-205ENST00000555405 CFAP43Q8NDM7 1665 aa15.21■□□□□ 0.03
NEK9-205ENST00000555405 MYOM3Q5VTT5 1437 aa15.21■□□□□ 0.03
NEK9-205ENST00000555405 FGD6Q6ZV73 1430 aa15.21■□□□□ 0.03
NEK9-205ENST00000555405 RIMBP3CA6NJZ7 1639 aa15.21■□□□□ 0.02
NEK9-205ENST00000555405 RIMBP3BA6NNM3 1639 aa15.21■□□□□ 0.02
NEK9-205ENST00000555405 RIMBP3Q9UFD9 1639 aa15.21■□□□□ 0.02
NEK9-205ENST00000555405 ASXL2Q76L83 1435 aa15.19■□□□□ 0.02
NEK9-205ENST00000555405 SUPT6HQ7KZ85 1726 aaKnown RBP15.18■□□□□ 0.02
NEK9-205ENST00000555405 ADCY10Q96PN6 1610 aa15.17■□□□□ 0.02
NEK9-205ENST00000555405 KIF14Q15058 1648 aa15.17■□□□□ 0.02
NEK9-205ENST00000555405 TSPY4P0CV99 314 aa15.17■□□□□ 0.02
NEK9-205ENST00000555405 TSPY10P0CW01 314 aa15.17■□□□□ 0.02
NEK9-205ENST00000555405 EFCAB2Q5VUJ9 269 aa15.17■□□□□ 0.02
NEK9-205ENST00000555405 TRIM52Q96A61 297 aa15.16■□□□□ 0.02
NEK9-205ENST00000555405 RRBP1Q9P2E9 1410 aaKnown RBP15.15■□□□□ 0.02
NEK9-205ENST00000555405 KDM5BQ9UGL1 1544 aa15.15■□□□□ 0.02
NEK9-205ENST00000555405 DNAJC5Q9H3Z4 198 aa15.15■□□□□ 0.02
NEK9-205ENST00000555405 ZCCHC11Q5TAX3 1644 aaKnown RBP15.14■□□□□ 0.01
NEK9-205ENST00000555405 UHRF1BP1LA0JNW5 1464 aa15.14■□□□□ 0.01
NEK9-205ENST00000555405 GPATCH8Q9UKJ3 1502 aaKnown RBP15.13■□□□□ 0.01
NEK9-205ENST00000555405 AFAP1Q8N556 730 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms