RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
NEK9-205ENST00000555405 DCAF8L2P0C7V8 631 aa19.82■□□□□ 0.76
NEK9-205ENST00000555405 CCDC180Q9P1Z9 1646 aa19.72■□□□□ 0.75
NEK9-205ENST00000555405 ABCC9O60706 1549 aa19.48■□□□□ 0.71
NEK9-205ENST00000555405 SHROOM4Q9ULL8 1493 aa19.16■□□□□ 0.66
NEK9-205ENST00000555405 ZCCHC6Q5VYS8 1495 aaKnown RBP19.08■□□□□ 0.65
NEK9-205ENST00000555405 DCAF1Q9Y4B6 1507 aa18.62■□□□□ 0.57
NEK9-205ENST00000555405 NACADO15069 1562 aa18.59■□□□□ 0.57
NEK9-205ENST00000555405 SCRIBQ14160 1630 aa18.56■□□□□ 0.56
NEK9-205ENST00000555405 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
NEK9-205ENST00000555405 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
NEK9-205ENST00000555405 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
NEK9-205ENST00000555405 SUPT5HO00267 1087 aaKnown RBP18.41■□□□□ 0.54
NEK9-205ENST00000555405 UNC13AQ9UPW8 1703 aa18.03■□□□□ 0.48
NEK9-205ENST00000555405 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
NEK9-205ENST00000555405 BICRAQ9NZM4 1560 aa17.95■□□□□ 0.46
NEK9-205ENST00000555405 RSF1Q96T23 1441 aaPredicted RBP17.78■□□□□ 0.44
NEK9-205ENST00000555405 MROH2BQ7Z745 1585 aa17.76■□□□□ 0.43
NEK9-205ENST00000555405 BAZ1AQ9NRL2 1556 aaPredicted RBP17.64■□□□□ 0.41
NEK9-205ENST00000555405 WIZO95785 1651 aa17.58■□□□□ 0.41
NEK9-205ENST00000555405 SMARCA4P51532 1647 aa17.57■□□□□ 0.4
NEK9-205ENST00000555405 EIF4G1Q04637 1599 aaKnown RBP17.52■□□□□ 0.4
NEK9-205ENST00000555405 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.39
NEK9-205ENST00000555405 ATAD2BQ9ULI0 1458 aa17.44■□□□□ 0.38
NEK9-205ENST00000555405 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
NEK9-205ENST00000555405 CC2D2AQ9P2K1 1620 aa17.35■□□□□ 0.37
NEK9-205ENST00000555405 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
NEK9-205ENST00000555405 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
NEK9-205ENST00000555405 CCDC88BA6NC98 1476 aa17.26■□□□□ 0.35
NEK9-205ENST00000555405 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
NEK9-205ENST00000555405 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
NEK9-205ENST00000555405 PEG3Q9GZU2 1588 aa17.16■□□□□ 0.34
NEK9-205ENST00000555405 TRIM41Q8WV44 630 aa17.15■□□□□ 0.34
NEK9-205ENST00000555405 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
NEK9-205ENST00000555405 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
NEK9-205ENST00000555405 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
NEK9-205ENST00000555405 NESP48681 1621 aa16.97■□□□□ 0.31
NEK9-205ENST00000555405 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
NEK9-205ENST00000555405 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
NEK9-205ENST00000555405 CFTRP13569 1480 aa16.83■□□□□ 0.28
NEK9-205ENST00000555405 WRNQ14191 1432 aaPredicted RBP eCLIP16.8■□□□□ 0.28
NEK9-205ENST00000555405 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
NEK9-205ENST00000555405 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
NEK9-205ENST00000555405 ERCC6Q03468 1493 aa16.72■□□□□ 0.27
NEK9-205ENST00000555405 PDS5BQ9NTI5 1447 aa16.72■□□□□ 0.27
NEK9-205ENST00000555405 CEP164Q9UPV0 1460 aa16.65■□□□□ 0.26
NEK9-205ENST00000555405 RANGAP1P46060 587 aaPredicted RBP16.64■□□□□ 0.25
NEK9-205ENST00000555405 LAMC3Q9Y6N6 1575 aa16.62■□□□□ 0.25
NEK9-205ENST00000555405 SOGA1O94964 1423 aa16.62■□□□□ 0.25
NEK9-205ENST00000555405 SYNJ1O43426 1573 aa16.62■□□□□ 0.25
NEK9-205ENST00000555405 CUX1P39880 1505 aa16.58■□□□□ 0.24
NEK9-205ENST00000555405 RUSC2Q8N2Y8 1516 aa16.57■□□□□ 0.24
NEK9-205ENST00000555405 UBTFP17480 764 aaKnown RBP16.56■□□□□ 0.24
NEK9-205ENST00000555405 CSRNP3Q8WYN3 585 aa16.55■□□□□ 0.24
NEK9-205ENST00000555405 RAD54L2Q9Y4B4 1467 aa16.52■□□□□ 0.24
NEK9-205ENST00000555405 KIF21AQ7Z4S6 1674 aa16.51■□□□□ 0.23
NEK9-205ENST00000555405 FGD5Q6ZNL6 1462 aa16.5■□□□□ 0.23
NEK9-205ENST00000555405 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
NEK9-205ENST00000555405 TOPBP1Q92547 1522 aa16.49■□□□□ 0.23
NEK9-205ENST00000555405 TDRD9Q8NDG6 1382 aaKnown RBP16.49■□□□□ 0.23
NEK9-205ENST00000555405 CUX2O14529 1486 aa16.46■□□□□ 0.23
NEK9-205ENST00000555405 TOP2BQ02880 1626 aa16.45■□□□□ 0.22
NEK9-205ENST00000555405 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
NEK9-205ENST00000555405 FBLN2P98095 1184 aa16.43■□□□□ 0.22
NEK9-205ENST00000555405 POLA1P09884 1462 aaPredicted RBP16.42■□□□□ 0.22
NEK9-205ENST00000555405 PRDM2Q13029 1718 aa16.4■□□□□ 0.22
NEK9-205ENST00000555405 DNMBPQ6XZF7 1577 aa16.4■□□□□ 0.22
NEK9-205ENST00000555405 KIF27Q86VH2 1401 aa16.39■□□□□ 0.21
NEK9-205ENST00000555405 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.216e-8■■■■■ 30.5
NEK9-205ENST00000555405 BIVM-ERCC5R4GMW8 1640 aa16.34■□□□□ 0.21
NEK9-205ENST00000555405 IGF1RP08069 1367 aa16.28■□□□□ 0.2
NEK9-205ENST00000555405 EEA1Q15075 1411 aa16.28■□□□□ 0.2
NEK9-205ENST00000555405 TTBK1Q5TCY1 1321 aaPredicted RBP16.28■□□□□ 0.2
NEK9-205ENST00000555405 ZNF608Q9ULD9 1512 aaPredicted RBP16.28■□□□□ 0.2
NEK9-205ENST00000555405 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
NEK9-205ENST00000555405 PPARGC1BQ86YN6 1023 aaKnown RBP16.25■□□□□ 0.19
NEK9-205ENST00000555405 P3H3Q8IVL6 736 aa16.24■□□□□ 0.19
NEK9-205ENST00000555405 GAPVD1Q14C86 1478 aa16.23■□□□□ 0.19
NEK9-205ENST00000555405 RAPGEF2Q9Y4G8 1499 aa16.23■□□□□ 0.19
NEK9-205ENST00000555405 CHMP7Q8WUX9 453 aaPredicted RBP16.23■□□□□ 0.19
NEK9-205ENST00000555405 WDR62O43379 1518 aa16.21■□□□□ 0.19
NEK9-205ENST00000555405 ABCA10Q8WWZ4 1543 aa16.21■□□□□ 0.19
NEK9-205ENST00000555405 IFT140Q96RY7 1462 aa16.19■□□□□ 0.18
NEK9-205ENST00000555405 THOC2Q8NI27 1593 aaKnown RBP16.19■□□□□ 0.18
NEK9-205ENST00000555405 ATP1B4Q9UN42 357 aaPredicted RBP16.18■□□□□ 0.18
NEK9-205ENST00000555405 GOLGA3Q08378 1498 aa16.17■□□□□ 0.18
NEK9-205ENST00000555405 TARBP1Q13395 1621 aaKnown RBP16.11■□□□□ 0.17
NEK9-205ENST00000555405 TNIKQ9UKE5 1360 aa16.09■□□□□ 0.17
NEK9-205ENST00000555405 GRIN2BQ13224 1484 aa16.09■□□□□ 0.17
NEK9-205ENST00000555405 PRXQ9BXM0 1461 aa16.09■□□□□ 0.17
NEK9-205ENST00000555405 CEP162Q5TB80 1403 aa16.07■□□□□ 0.16
NEK9-205ENST00000555405 SNAPC4Q5SXM2 1469 aa16.07■□□□□ 0.16
NEK9-205ENST00000555405 CLIP1P30622 1438 aa16.03■□□□□ 0.16
NEK9-205ENST00000555405 ARID3CA6NKF2 412 aa16.03■□□□□ 0.16
NEK9-205ENST00000555405 EIF4G3O43432 1585 aaKnown RBP16.01■□□□□ 0.15
NEK9-205ENST00000555405 APLP2Q06481 763 aa16.01■□□□□ 0.15
NEK9-205ENST00000555405 FHAD1B1AJZ9 1412 aa16■□□□□ 0.15
NEK9-205ENST00000555405 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
NEK9-205ENST00000555405 KIF21BO75037 1637 aa15.99■□□□□ 0.15
NEK9-205ENST00000555405 ERICH3Q5RHP9 1530 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms