RNA–Protein interactions for RNA: ENST00000542355.6

SCG3-202, Transcript of secretogranin III, humanhuman

TSL 2 BASIC

Gene SCG3, Length 2,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG3-202ENST00000542355 TRIM26Q12899 539 aaPredicted RBP17.21■□□□□ 0.35
SCG3-202ENST00000542355 PBRM1Q86U86 1689 aa17.2■□□□□ 0.34
SCG3-202ENST00000542355 VPS8Q8N3P4 1428 aa17.2■□□□□ 0.34
SCG3-202ENST00000542355 EIF4G3O43432 1585 aaKnown RBP17.18■□□□□ 0.34
SCG3-202ENST00000542355 ARHGAP35Q9NRY4 1499 aa17.18■□□□□ 0.34
SCG3-202ENST00000542355 ARAP1Q96P48 1450 aa17.17■□□□□ 0.34
SCG3-202ENST00000542355 SNAPC4Q5SXM2 1469 aa17.16■□□□□ 0.34
SCG3-202ENST00000542355 TTBK1Q5TCY1 1321 aaPredicted RBP17.15■□□□□ 0.34
SCG3-202ENST00000542355 P3H3Q8IVL6 736 aa17.15■□□□□ 0.34
SCG3-202ENST00000542355 ADAMTS12P58397 1594 aa17.15■□□□□ 0.34
SCG3-202ENST00000542355 APLP2Q06481 763 aa17.12■□□□□ 0.33
SCG3-202ENST00000542355 CHMP7Q8WUX9 453 aaPredicted RBP17.11■□□□□ 0.33
SCG3-202ENST00000542355 FBLN2P98095 1184 aa17.11■□□□□ 0.33
SCG3-202ENST00000542355 MAGI1Q96QZ7 1491 aaPredicted RBP17.09■□□□□ 0.33
SCG3-202ENST00000542355 CTTNBP2Q8WZ74 1663 aa17.07■□□□□ 0.32
SCG3-202ENST00000542355 GRIN2AQ12879 1464 aa17.05■□□□□ 0.32
SCG3-202ENST00000542355 SYNJ2O15056 1496 aa17.04■□□□□ 0.32
SCG3-202ENST00000542355 FHOD3Q2V2M9 1422 aa17.04■□□□□ 0.32
SCG3-202ENST00000542355 EFCAB5A4FU69 1503 aa17.02■□□□□ 0.31
SCG3-202ENST00000542355 AMER1Q5JTC6 1135 aaPredicted RBP16.98■□□□□ 0.31
SCG3-202ENST00000542355 ATP1B4Q9UN42 357 aaPredicted RBP16.98■□□□□ 0.31
SCG3-202ENST00000542355 KIAA0586Q9BVV6 1533 aa16.98■□□□□ 0.31
SCG3-202ENST00000542355 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
SCG3-202ENST00000542355 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.31
SCG3-202ENST00000542355 SAMD9Q5K651 1589 aa16.94■□□□□ 0.3
SCG3-202ENST00000542355 FMN1Q68DA7 1419 aa16.93■□□□□ 0.3
SCG3-202ENST00000542355 CEP170Q5SW79 1584 aa16.92■□□□□ 0.3
SCG3-202ENST00000542355 NUP160Q12769 1436 aa16.92■□□□□ 0.3
SCG3-202ENST00000542355 UGGT2Q9NYU1 1516 aa16.9■□□□□ 0.3
SCG3-202ENST00000542355 JPH4Q96JJ6 628 aa16.89■□□□□ 0.3
SCG3-202ENST00000542355 CASKIN1Q8WXD9 1431 aa16.89■□□□□ 0.29
SCG3-202ENST00000542355 PCF11O94913 1555 aaKnown RBP16.87■□□□□ 0.29
SCG3-202ENST00000542355 FYCO1Q9BQS8 1478 aa16.86■□□□□ 0.29
SCG3-202ENST00000542355 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
SCG3-202ENST00000542355 MAP3K1Q13233 1512 aa16.84■□□□□ 0.29
SCG3-202ENST00000542355 TIAM1Q13009 1591 aa16.83■□□□□ 0.28
SCG3-202ENST00000542355 LRRC9Q6ZRR7 1453 aa16.8■□□□□ 0.28
SCG3-202ENST00000542355 KIAA0556O60303 1618 aa16.8■□□□□ 0.28
SCG3-202ENST00000542355 CARMIL2Q6F5E8 1435 aa16.79■□□□□ 0.28
SCG3-202ENST00000542355 CHD1O14646 1710 aa16.78■□□□□ 0.28
SCG3-202ENST00000542355 ARID3CA6NKF2 412 aa16.75■□□□□ 0.27
SCG3-202ENST00000542355 PRG4Q92954 1404 aaPredicted RBP16.73■□□□□ 0.27
SCG3-202ENST00000542355 HNRNPUL2Q1KMD3 747 aaKnown RBP16.73■□□□□ 0.27
SCG3-202ENST00000542355 CFAP43Q8NDM7 1665 aa16.72■□□□□ 0.27
SCG3-202ENST00000542355 MTUS2Q5JR59 1369 aa16.71■□□□□ 0.27
SCG3-202ENST00000542355 HRCP23327 699 aa16.71■□□□□ 0.27
SCG3-202ENST00000542355 HECW1Q76N89 1606 aa16.69■□□□□ 0.26
SCG3-202ENST00000542355 CCDC18Q5T9S5 1454 aa16.69■□□□□ 0.26
SCG3-202ENST00000542355 EPRSP07814 1512 aaKnown RBP16.68■□□□□ 0.26
SCG3-202ENST00000542355 PHLDB1Q86UU1 1377 aa16.68■□□□□ 0.26
SCG3-202ENST00000542355 RRBP1Q9P2E9 1410 aaKnown RBP16.68■□□□□ 0.26
SCG3-202ENST00000542355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.67■□□□□ 0.26
SCG3-202ENST00000542355 PLB1Q6P1J6 1458 aa16.67■□□□□ 0.26
SCG3-202ENST00000542355 LRRIQ1Q96JM4 1722 aa16.67■□□□□ 0.26
SCG3-202ENST00000542355 CCNB3Q8WWL7 1395 aa16.67■□□□□ 0.26
SCG3-202ENST00000542355 CDK13Q14004 1512 aaKnown RBP16.65■□□□□ 0.26
SCG3-202ENST00000542355 PTPRGP23470 1445 aa16.65■□□□□ 0.26
SCG3-202ENST00000542355 NUP153P49790 1475 aaKnown RBP16.65■□□□□ 0.26
SCG3-202ENST00000542355 RAPGEF6Q8TEU7 1601 aa16.64■□□□□ 0.25
SCG3-202ENST00000542355 NCBP3Q53F19 620 aaKnown RBP16.63■□□□□ 0.25
SCG3-202ENST00000542355 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
SCG3-202ENST00000542355 CLASP1Q7Z460 1538 aa16.61■□□□□ 0.25
SCG3-202ENST00000542355 SHROOM2Q13796 1616 aa16.61■□□□□ 0.25
SCG3-202ENST00000542355 MAGI3Q5TCQ9 1506 aa16.61■□□□□ 0.25
SCG3-202ENST00000542355 ITGAEP38570 1179 aa16.61■□□□□ 0.25
SCG3-202ENST00000542355 CDK11AQ9UQ88 783 aaPredicted RBP16.61■□□□□ 0.25
SCG3-202ENST00000542355 FAM50AQ14320 339 aaKnown RBP16.6■□□□□ 0.25
SCG3-202ENST00000542355 EHBP1L1Q8N3D4 1523 aa16.59■□□□□ 0.25
SCG3-202ENST00000542355 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
SCG3-202ENST00000542355 NCOA2Q15596 1464 aa16.59■□□□□ 0.25
SCG3-202ENST00000542355 ERCC6L2Q5T890 1561 aa16.58■□□□□ 0.24
SCG3-202ENST00000542355 ABCA8O94911 1581 aa16.56■□□□□ 0.24
SCG3-202ENST00000542355 CCER1Q8TC90 406 aaPredicted RBP16.56■□□□□ 0.24
SCG3-202ENST00000542355 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
SCG3-202ENST00000542355 FGD6Q6ZV73 1430 aa16.53■□□□□ 0.24
SCG3-202ENST00000542355 UACAQ9BZF9 1416 aa16.53■□□□□ 0.24
SCG3-202ENST00000542355 PLEKHD1A6NEE1 506 aa16.53■□□□□ 0.24
SCG3-202ENST00000542355 ATP10BO94823 1461 aa16.52■□□□□ 0.24
SCG3-202ENST00000542355 MYOM3Q5VTT5 1437 aa16.52■□□□□ 0.24
SCG3-202ENST00000542355 ARHGEF11O15085 1522 aa16.51■□□□□ 0.23
SCG3-202ENST00000542355 ZEB1P37275 1124 aaPredicted RBP16.5■□□□□ 0.23
SCG3-202ENST00000542355 TROQ12816 1431 aaPredicted RBP16.5■□□□□ 0.23
SCG3-202ENST00000542355 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.49■□□□□ 0.23
SCG3-202ENST00000542355 ADRA2BP18089 450 aa16.43■□□□□ 0.22
SCG3-202ENST00000542355 ABCC2Q92887 1545 aa16.42■□□□□ 0.22
SCG3-202ENST00000542355 MIA2Q96PC5 1412 aa16.42■□□□□ 0.22
SCG3-202ENST00000542355 PTPN23Q9H3S7 1636 aa16.4■□□□□ 0.22
SCG3-202ENST00000542355 CFDP1Q9UEE9 299 aaPredicted RBP16.39■□□□□ 0.21
SCG3-202ENST00000542355 KIF14Q15058 1648 aa16.38■□□□□ 0.21
SCG3-202ENST00000542355 UHRF1BP1LA0JNW5 1464 aa16.38■□□□□ 0.21
SCG3-202ENST00000542355 TCOF1Q13428 1488 aaKnown RBP16.38■□□□□ 0.21
SCG3-202ENST00000542355 ZNF644Q9H582 1327 aaPredicted RBP16.38■□□□□ 0.21
SCG3-202ENST00000542355 PTPRKQ15262 1439 aa16.37■□□□□ 0.21
SCG3-202ENST00000542355 GPATCH8Q9UKJ3 1502 aaKnown RBP16.36■□□□□ 0.21
SCG3-202ENST00000542355 SETD5Q9C0A6 1442 aa16.36■□□□□ 0.21
SCG3-202ENST00000542355 RAB3GAP2Q9H2M9 1393 aa16.36■□□□□ 0.21
SCG3-202ENST00000542355 ZNF777Q9ULD5 760 aaPredicted RBP16.36■□□□□ 0.21
SCG3-202ENST00000542355 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
SCG3-202ENST00000542355 ADCY10Q96PN6 1610 aa16.34■□□□□ 0.21
SCG3-202ENST00000542355 CHIC2Q9UKJ5 165 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms