RNA–Protein interactions for RNA: ENST00000542355.6

SCG3-202, Transcript of secretogranin III, humanhuman

TSL 2 BASIC

Gene SCG3, Length 2,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG3-202ENST00000542355 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
SCG3-202ENST00000542355 CCDC180Q9P1Z9 1646 aa21.49■■□□□ 1.03
SCG3-202ENST00000542355 ZCCHC6Q5VYS8 1495 aaKnown RBP20.81■□□□□ 0.92
SCG3-202ENST00000542355 DCAF8L2P0C7V8 631 aa20.7■□□□□ 0.9
SCG3-202ENST00000542355 ABCC9O60706 1549 aa20.51■□□□□ 0.87
SCG3-202ENST00000542355 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
SCG3-202ENST00000542355 DCAF1Q9Y4B6 1507 aa20.43■□□□□ 0.86
SCG3-202ENST00000542355 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
SCG3-202ENST00000542355 MYO15BQ96JP2 1530 aa20.18■□□□□ 0.82
SCG3-202ENST00000542355 NACADO15069 1562 aa20.09■□□□□ 0.81
SCG3-202ENST00000542355 RB1CC1Q8TDY2 1594 aa19.93■□□□□ 0.78
SCG3-202ENST00000542355 SCRIBQ14160 1630 aa19.89■□□□□ 0.77
SCG3-202ENST00000542355 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
SCG3-202ENST00000542355 UNC13AQ9UPW8 1703 aa19.45■□□□□ 0.7
SCG3-202ENST00000542355 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
SCG3-202ENST00000542355 AEBP2Q6ZN18 517 aaPredicted RBP19.41■□□□□ 0.7
SCG3-202ENST00000542355 BICRAQ9NZM4 1560 aa19.33■□□□□ 0.68
SCG3-202ENST00000542355 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.68
SCG3-202ENST00000542355 RSF1Q96T23 1441 aaPredicted RBP19.29■□□□□ 0.68
SCG3-202ENST00000542355 MROH2BQ7Z745 1585 aa19.18■□□□□ 0.66
SCG3-202ENST00000542355 BAZ1AQ9NRL2 1556 aaPredicted RBP19.12■□□□□ 0.65
SCG3-202ENST00000542355 SMARCA4P51532 1647 aa19.02■□□□□ 0.64
SCG3-202ENST00000542355 WIZO95785 1651 aa19■□□□□ 0.63
SCG3-202ENST00000542355 TOP2AP11388 1531 aaKnown RBP18.77■□□□□ 0.6
SCG3-202ENST00000542355 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.6
SCG3-202ENST00000542355 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
SCG3-202ENST00000542355 PEG3Q9GZU2 1588 aa18.76■□□□□ 0.59
SCG3-202ENST00000542355 SMARCA2P51531 1590 aa18.71■□□□□ 0.59
SCG3-202ENST00000542355 BAZ1BQ9UIG0 1483 aaKnown RBP18.66■□□□□ 0.58
SCG3-202ENST00000542355 CCDC88BA6NC98 1476 aa18.65■□□□□ 0.58
SCG3-202ENST00000542355 NCAPD3P42695 1498 aa18.6■□□□□ 0.57
SCG3-202ENST00000542355 SLC24A1O60721 1099 aa18.57■□□□□ 0.56
SCG3-202ENST00000542355 HMGXB3Q12766 1538 aa18.51■□□□□ 0.55
SCG3-202ENST00000542355 CC2D2AQ9P2K1 1620 aa18.49■□□□□ 0.55
SCG3-202ENST00000542355 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
SCG3-202ENST00000542355 PHF23Q9BUL5 403 aaPredicted RBP18.35■□□□□ 0.53
SCG3-202ENST00000542355 EHMT2Q96KQ7 1210 aa18.32■□□□□ 0.52
SCG3-202ENST00000542355 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
SCG3-202ENST00000542355 CFTRP13569 1480 aa18.19■□□□□ 0.5
SCG3-202ENST00000542355 DNAJC5BQ9UF47 199 aa18.18■□□□□ 0.5
SCG3-202ENST00000542355 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
SCG3-202ENST00000542355 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
SCG3-202ENST00000542355 WRNQ14191 1432 aaPredicted RBP eCLIP18.15■□□□□ 0.5
SCG3-202ENST00000542355 LOC105371045A0A1W2PR82 267 aa18.1■□□□□ 0.49
SCG3-202ENST00000542355 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
SCG3-202ENST00000542355 NESP48681 1621 aa18■□□□□ 0.47
SCG3-202ENST00000542355 SOGA1O94964 1423 aa17.96■□□□□ 0.47
SCG3-202ENST00000542355 FANCD2Q9BXW9 1451 aa17.94■□□□□ 0.46
SCG3-202ENST00000542355 TOP2BQ02880 1626 aa17.92■□□□□ 0.46
SCG3-202ENST00000542355 CUX1P39880 1505 aa17.92■□□□□ 0.46
SCG3-202ENST00000542355 PRDM2Q13029 1718 aa17.92■□□□□ 0.46
SCG3-202ENST00000542355 LAMC3Q9Y6N6 1575 aa17.91■□□□□ 0.46
SCG3-202ENST00000542355 RUSC2Q8N2Y8 1516 aa17.89■□□□□ 0.45
SCG3-202ENST00000542355 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
SCG3-202ENST00000542355 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
SCG3-202ENST00000542355 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
SCG3-202ENST00000542355 EEA1Q15075 1411 aa17.84■□□□□ 0.45
SCG3-202ENST00000542355 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
SCG3-202ENST00000542355 FGD5Q6ZNL6 1462 aa17.74■□□□□ 0.43
SCG3-202ENST00000542355 TOPBP1Q92547 1522 aa17.73■□□□□ 0.43
SCG3-202ENST00000542355 DNMBPQ6XZF7 1577 aa17.71■□□□□ 0.43
SCG3-202ENST00000542355 URB2Q14146 1524 aaKnown RBP17.7■□□□□ 0.42
SCG3-202ENST00000542355 KIF27Q86VH2 1401 aa17.69■□□□□ 0.42
SCG3-202ENST00000542355 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
SCG3-202ENST00000542355 UBTFP17480 764 aaKnown RBP17.67■□□□□ 0.42
SCG3-202ENST00000542355 CUX2O14529 1486 aa17.65■□□□□ 0.42
SCG3-202ENST00000542355 POLA1P09884 1462 aaPredicted RBP17.65■□□□□ 0.42
SCG3-202ENST00000542355 RAD54L2Q9Y4B4 1467 aa17.64■□□□□ 0.41
SCG3-202ENST00000542355 GOLGA3Q08378 1498 aa17.62■□□□□ 0.41
SCG3-202ENST00000542355 TNIKQ9UKE5 1360 aa17.59■□□□□ 0.41
SCG3-202ENST00000542355 MRC2Q9UBG0 1479 aa17.58■□□□□ 0.41
SCG3-202ENST00000542355 ERCC6Q03468 1493 aa17.58■□□□□ 0.4
SCG3-202ENST00000542355 IGF1RP08069 1367 aa17.57■□□□□ 0.4
SCG3-202ENST00000542355 RAPGEF2Q9Y4G8 1499 aa17.57■□□□□ 0.4
SCG3-202ENST00000542355 KIF21BO75037 1637 aa17.57■□□□□ 0.4
SCG3-202ENST00000542355 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
SCG3-202ENST00000542355 PRXQ9BXM0 1461 aa17.55■□□□□ 0.4
SCG3-202ENST00000542355 TDRD9Q8NDG6 1382 aaKnown RBP17.5■□□□□ 0.39
SCG3-202ENST00000542355 CEP162Q5TB80 1403 aa17.5■□□□□ 0.39
SCG3-202ENST00000542355 PLPPR3Q6T4P5 718 aa17.49■□□□□ 0.39
SCG3-202ENST00000542355 CARMIL1Q5VZK9 1371 aa17.48■□□□□ 0.39
SCG3-202ENST00000542355 WDR62O43379 1518 aa17.46■□□□□ 0.39
SCG3-202ENST00000542355 ERICH3Q5RHP9 1530 aa17.46■□□□□ 0.39
SCG3-202ENST00000542355 RANGAP1P46060 587 aaPredicted RBP17.44■□□□□ 0.38
SCG3-202ENST00000542355 TARBP1Q13395 1621 aaKnown RBP17.41■□□□□ 0.38
SCG3-202ENST00000542355 GAPVD1Q14C86 1478 aa17.41■□□□□ 0.38
SCG3-202ENST00000542355 WDR97A6NE52 1622 aa17.4■□□□□ 0.38
SCG3-202ENST00000542355 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
SCG3-202ENST00000542355 IFT140Q96RY7 1462 aa17.38■□□□□ 0.37
SCG3-202ENST00000542355 CLIP1P30622 1438 aa17.37■□□□□ 0.37
SCG3-202ENST00000542355 AQRO60306 1485 aaKnown RBP eCLIP17.37■□□□□ 0.37
SCG3-202ENST00000542355 ABCA5Q8WWZ7 1642 aa17.36■□□□□ 0.37
SCG3-202ENST00000542355 ZNF608Q9ULD9 1512 aaPredicted RBP17.33■□□□□ 0.36
SCG3-202ENST00000542355 KCNA4P22459 653 aa17.29■□□□□ 0.36
SCG3-202ENST00000542355 RTN4Q9NQC3 1192 aaKnown RBP17.29■□□□□ 0.36
SCG3-202ENST00000542355 CUL7Q14999 1698 aa17.29■□□□□ 0.36
SCG3-202ENST00000542355 PPARGC1BQ86YN6 1023 aaKnown RBP17.28■□□□□ 0.36
SCG3-202ENST00000542355 PCGF6Q9BYE7 350 aa17.27■□□□□ 0.36
SCG3-202ENST00000542355 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
SCG3-202ENST00000542355 FHAD1B1AJZ9 1412 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms