RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 THOC2Q8NI27 1593 aaKnown RBP31.4■■■□□ 2.62
SMPDL3A-203ENST00000539041 FHAD1B1AJZ9 1412 aa31.4■■■□□ 2.62
SMPDL3A-203ENST00000539041 ADAMTS12P58397 1594 aa31.39■■■□□ 2.62
SMPDL3A-203ENST00000539041 TIAM1Q13009 1591 aa31.39■■■□□ 2.62
SMPDL3A-203ENST00000539041 ERCC6Q03468 1493 aa31.39■■■□□ 2.62
SMPDL3A-203ENST00000539041 CFAP43Q8NDM7 1665 aa31.37■■■□□ 2.61
SMPDL3A-203ENST00000539041 PCF11O94913 1555 aaKnown RBP31.37■■■□□ 2.61
SMPDL3A-203ENST00000539041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.36■■■□□ 2.61
SMPDL3A-203ENST00000539041 KANK4Q5T7N3 995 aaPredicted RBP31.35■■■□□ 2.61
SMPDL3A-203ENST00000539041 AQRO60306 1485 aaKnown RBP eCLIP31.34■■■□□ 2.61
SMPDL3A-203ENST00000539041 SAMD9Q5K651 1589 aa31.34■■■□□ 2.61
SMPDL3A-203ENST00000539041 GRIN2BQ13224 1484 aa31.32■■■□□ 2.6
SMPDL3A-203ENST00000539041 CCER1Q8TC90 406 aaPredicted RBP31.31■■■□□ 2.6
SMPDL3A-203ENST00000539041 FHOD3Q2V2M9 1422 aa31.3■■■□□ 2.6
SMPDL3A-203ENST00000539041 ZNF608Q9ULD9 1512 aaPredicted RBP31.25■■■□□ 2.59
SMPDL3A-203ENST00000539041 FYCO1Q9BQS8 1478 aa31.24■■■□□ 2.59
SMPDL3A-203ENST00000539041 EIF4G3O43432 1585 aaKnown RBP31.24■■■□□ 2.59
SMPDL3A-203ENST00000539041 P3H3Q8IVL6 736 aa31.23■■■□□ 2.59
SMPDL3A-203ENST00000539041 RRBP1Q9P2E9 1410 aaKnown RBP31.21■■■□□ 2.59
SMPDL3A-203ENST00000539041 HNRNPUL2Q1KMD3 747 aaKnown RBP31.2■■■□□ 2.58
SMPDL3A-203ENST00000539041 CASKIN1Q8WXD9 1431 aa31.19■■■□□ 2.58
SMPDL3A-203ENST00000539041 FMN1Q68DA7 1419 aa31.18■■■□□ 2.58
SMPDL3A-203ENST00000539041 LRRC9Q6ZRR7 1453 aa31.18■■■□□ 2.58
SMPDL3A-203ENST00000539041 IQGAP2Q13576 1575 aa31.16■■■□□ 2.58
SMPDL3A-203ENST00000539041 SNAPC4Q5SXM2 1469 aa31.11■■■□□ 2.57
SMPDL3A-203ENST00000539041 LRRIQ1Q96JM4 1722 aa31.09■■■□□ 2.57
SMPDL3A-203ENST00000539041 CCNB3Q8WWL7 1395 aa31.03■■■□□ 2.56
SMPDL3A-203ENST00000539041 MAGI1Q96QZ7 1491 aaPredicted RBP31■■■□□ 2.55
SMPDL3A-203ENST00000539041 ATP1B4Q9UN42 357 aaPredicted RBP31■■■□□ 2.55
SMPDL3A-203ENST00000539041 UGGT2Q9NYU1 1516 aa30.98■■■□□ 2.55
SMPDL3A-203ENST00000539041 GRIN2AQ12879 1464 aa30.97■■■□□ 2.55
SMPDL3A-203ENST00000539041 KIAA0586Q9BVV6 1533 aa30.92■■■□□ 2.54
SMPDL3A-203ENST00000539041 PHLDB1Q86UU1 1377 aa30.9■■■□□ 2.54
SMPDL3A-203ENST00000539041 HECW1Q76N89 1606 aa30.89■■■□□ 2.54
SMPDL3A-203ENST00000539041 SYNJ2O15056 1496 aa30.87■■■□□ 2.53
SMPDL3A-203ENST00000539041 KIAA0556O60303 1618 aa30.85■■■□□ 2.53
SMPDL3A-203ENST00000539041 CCDC18Q5T9S5 1454 aa30.83■■■□□ 2.53
SMPDL3A-203ENST00000539041 CEP170Q5SW79 1584 aa30.81■■■□□ 2.52
SMPDL3A-203ENST00000539041 SUPT6HQ7KZ85 1726 aaKnown RBP30.81■■■□□ 2.52
SMPDL3A-203ENST00000539041 EHBP1L1Q8N3D4 1523 aa30.8■■■□□ 2.52
SMPDL3A-203ENST00000539041 MTUS2Q5JR59 1369 aa30.77■■■□□ 2.52
SMPDL3A-203ENST00000539041 DISP1Q96F81 1524 aa30.76■■■□□ 2.51
SMPDL3A-203ENST00000539041 CHMP7Q8WUX9 453 aaPredicted RBP30.71■■■□□ 2.51
SMPDL3A-203ENST00000539041 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.71■■■□□ 2.51
SMPDL3A-203ENST00000539041 DHX57Q6P158 1386 aaKnown RBP30.69■■■□□ 2.5
SMPDL3A-203ENST00000539041 NUP160Q12769 1436 aa30.68■■■□□ 2.5
SMPDL3A-203ENST00000539041 EPRSP07814 1512 aaKnown RBP30.68■■■□□ 2.5
SMPDL3A-203ENST00000539041 ITGAEP38570 1179 aa30.67■■■□□ 2.5
SMPDL3A-203ENST00000539041 MAGI3Q5TCQ9 1506 aa30.67■■■□□ 2.5
SMPDL3A-203ENST00000539041 NCOA2Q15596 1464 aa30.67■■■□□ 2.5
SMPDL3A-203ENST00000539041 FGD6Q6ZV73 1430 aa30.66■■■□□ 2.5
SMPDL3A-203ENST00000539041 CLSPNQ9HAW4 1339 aa30.65■■■□□ 2.5
SMPDL3A-203ENST00000539041 RAPGEF6Q8TEU7 1601 aa30.65■■■□□ 2.5
SMPDL3A-203ENST00000539041 FAM50AQ14320 339 aaKnown RBP30.64■■■□□ 2.5
SMPDL3A-203ENST00000539041 ARHGEF11O15085 1522 aa30.63■■■□□ 2.49
SMPDL3A-203ENST00000539041 CDK13Q14004 1512 aaKnown RBP30.6■■■□□ 2.49
SMPDL3A-203ENST00000539041 MYOM3Q5VTT5 1437 aa30.59■■■□□ 2.49
SMPDL3A-203ENST00000539041 FBLN2P98095 1184 aa30.58■■■□□ 2.49
SMPDL3A-203ENST00000539041 SETD5Q9C0A6 1442 aa30.57■■■□□ 2.48
SMPDL3A-203ENST00000539041 RAB3GAP2Q9H2M9 1393 aa30.56■■■□□ 2.48
SMPDL3A-203ENST00000539041 CHD1O14646 1710 aa30.54■■■□□ 2.48
SMPDL3A-203ENST00000539041 PTPN23Q9H3S7 1636 aa30.54■■■□□ 2.48
SMPDL3A-203ENST00000539041 CARMIL2Q6F5E8 1435 aa30.5■■■□□ 2.47
SMPDL3A-203ENST00000539041 NUP153P49790 1475 aaKnown RBP30.5■■■□□ 2.47
SMPDL3A-203ENST00000539041 JPH4Q96JJ6 628 aa30.43■■■□□ 2.46
SMPDL3A-203ENST00000539041 TCOF1Q13428 1488 aaKnown RBP30.42■■■□□ 2.46
SMPDL3A-203ENST00000539041 MAPKBP1O60336 1514 aa30.36■■■□□ 2.45
SMPDL3A-203ENST00000539041 PLB1Q6P1J6 1458 aa30.36■■■□□ 2.45
SMPDL3A-203ENST00000539041 MIA2Q96PC5 1412 aa30.35■■■□□ 2.45
SMPDL3A-203ENST00000539041 ARID3CA6NKF2 412 aa30.34■■■□□ 2.45
SMPDL3A-203ENST00000539041 ABCA8O94911 1581 aa30.33■■■□□ 2.45
SMPDL3A-203ENST00000539041 PTPRKQ15262 1439 aa30.32■■■□□ 2.44
SMPDL3A-203ENST00000539041 ADCY10Q96PN6 1610 aa30.32■■■□□ 2.44
SMPDL3A-203ENST00000539041 ZNF316A6NFI3 1004 aaPredicted RBP30.3■■■□□ 2.44
SMPDL3A-203ENST00000539041 GCC2Q8IWJ2 1684 aa30.29■■■□□ 2.44
SMPDL3A-203ENST00000539041 HFM1A2PYH4 1435 aa30.29■■■□□ 2.44
SMPDL3A-203ENST00000539041 CDK11AQ9UQ88 783 aaPredicted RBP30.28■■■□□ 2.44
SMPDL3A-203ENST00000539041 SHROOM2Q13796 1616 aa30.28■■■□□ 2.44
SMPDL3A-203ENST00000539041 ITSN2Q9NZM3 1697 aa30.27■■■□□ 2.44
SMPDL3A-203ENST00000539041 TROQ12816 1431 aaPredicted RBP30.25■■■□□ 2.43
SMPDL3A-203ENST00000539041 PRG4Q92954 1404 aaPredicted RBP30.23■■■□□ 2.43
SMPDL3A-203ENST00000539041 NAIPQ13075 1403 aa30.2■■■□□ 2.43
SMPDL3A-203ENST00000539041 KIF14Q15058 1648 aa30.18■■■□□ 2.42
SMPDL3A-203ENST00000539041 DIEXFQ68CQ4 756 aaKnown RBP30.18■■■□□ 2.42
SMPDL3A-203ENST00000539041 DNMT1P26358 1616 aaKnown RBP30.17■■■□□ 2.42
SMPDL3A-203ENST00000539041 AKNAQ7Z591 1439 aa30.16■■■□□ 2.42
SMPDL3A-203ENST00000539041 UACAQ9BZF9 1416 aa30.11■■■□□ 2.41
SMPDL3A-203ENST00000539041 PTPRGP23470 1445 aa30.1■■■□□ 2.41
SMPDL3A-203ENST00000539041 ATP10BO94823 1461 aa30.1■■■□□ 2.41
SMPDL3A-203ENST00000539041 CDC42BPAQ5VT25 1732 aa30.09■■■□□ 2.41
SMPDL3A-203ENST00000539041 DAPK1P53355 1430 aa30.06■■■□□ 2.4
SMPDL3A-203ENST00000539041 CLASP1Q7Z460 1538 aa30.05■■■□□ 2.4
SMPDL3A-203ENST00000539041 GPATCH8Q9UKJ3 1502 aaKnown RBP30.03■■■□□ 2.4
SMPDL3A-203ENST00000539041 ADGBQ8N7X0 1667 aa30.03■■■□□ 2.4
SMPDL3A-203ENST00000539041 CROCC2H7BZ55 1655 aa30.02■■■□□ 2.4
SMPDL3A-203ENST00000539041 CAMSAP2Q08AD1 1489 aa30.01■■■□□ 2.4
SMPDL3A-203ENST00000539041 KDM6BO15054 1643 aa30■■■□□ 2.39
SMPDL3A-203ENST00000539041 CHIC2Q9UKJ5 165 aa30■■■□□ 2.39
SMPDL3A-203ENST00000539041 ABCC5O15440 1437 aa29.99■■■□□ 2.39
SMPDL3A-203ENST00000539041 ERCC6L2Q5T890 1561 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms