RNA–Protein interactions for RNA: ENST00000534765.1

SF3B2-216, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 3,932 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-216ENST00000534765 WDR62O43379 1518 aa13.78□□□□□ -0.2
SF3B2-216ENST00000534765 YTHDC1Q96MU7 727 aaKnown RBP13.78□□□□□ -0.2
SF3B2-216ENST00000534765 PBRM1Q86U86 1689 aa13.76□□□□□ -0.21
SF3B2-216ENST00000534765 GAPVD1Q14C86 1478 aa13.76□□□□□ -0.21
SF3B2-216ENST00000534765 VPS8Q8N3P4 1428 aa13.75□□□□□ -0.21
SF3B2-216ENST00000534765 P3H3Q8IVL6 736 aa13.73□□□□□ -0.21
SF3B2-216ENST00000534765 KANK4Q5T7N3 995 aaPredicted RBP13.73□□□□□ -0.21
SF3B2-216ENST00000534765 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
SF3B2-216ENST00000534765 CUL7Q14999 1698 aa13.7□□□□□ -0.22
SF3B2-216ENST00000534765 CTTNBP2Q8WZ74 1663 aa13.69□□□□□ -0.22
SF3B2-216ENST00000534765 EIF4G3O43432 1585 aaKnown RBP13.68□□□□□ -0.22
SF3B2-216ENST00000534765 LRRIQ1Q96JM4 1722 aa13.67□□□□□ -0.22
SF3B2-216ENST00000534765 FHOD3Q2V2M9 1422 aa13.65□□□□□ -0.22
SF3B2-216ENST00000534765 ADAMTS12P58397 1594 aa13.65□□□□□ -0.23
SF3B2-216ENST00000534765 PRKCSHP14314 528 aaPredicted RBP13.63□□□□□ -0.23
SF3B2-216ENST00000534765 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
SF3B2-216ENST00000534765 PCF11O94913 1555 aaKnown RBP13.62□□□□□ -0.23
SF3B2-216ENST00000534765 SNAPC4Q5SXM2 1469 aa13.6□□□□□ -0.23
SF3B2-216ENST00000534765 IFT140Q96RY7 1462 aa13.6□□□□□ -0.23
SF3B2-216ENST00000534765 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.58□□□□□ -0.24
SF3B2-216ENST00000534765 SAMD9Q5K651 1589 aa13.57□□□□□ -0.24
SF3B2-216ENST00000534765 GRIN2BQ13224 1484 aa13.56□□□□□ -0.24
SF3B2-216ENST00000534765 FHAD1B1AJZ9 1412 aa13.54□□□□□ -0.24
SF3B2-216ENST00000534765 CEP170Q5SW79 1584 aa13.53□□□□□ -0.24
SF3B2-216ENST00000534765 TIAM1Q13009 1591 aa13.51□□□□□ -0.25
SF3B2-216ENST00000534765 HNRNPUL2Q1KMD3 747 aaKnown RBP13.5□□□□□ -0.25
SF3B2-216ENST00000534765 GRIN2AQ12879 1464 aa13.48□□□□□ -0.25
SF3B2-216ENST00000534765 MAGI3Q5TCQ9 1506 aa13.48□□□□□ -0.25
SF3B2-216ENST00000534765 IQGAP2Q13576 1575 aa13.48□□□□□ -0.25
SF3B2-216ENST00000534765 CFAP43Q8NDM7 1665 aa13.48□□□□□ -0.25
SF3B2-216ENST00000534765 DISP1Q96F81 1524 aa13.47□□□□□ -0.25
SF3B2-216ENST00000534765 PHLDB1Q86UU1 1377 aa13.46□□□□□ -0.25
SF3B2-216ENST00000534765 ARID3CA6NKF2 412 aa13.45□□□□□ -0.26
SF3B2-216ENST00000534765 ATP1B4Q9UN42 357 aaPredicted RBP13.45□□□□□ -0.26
SF3B2-216ENST00000534765 EFCAB5A4FU69 1503 aa13.45□□□□□ -0.26
SF3B2-216ENST00000534765 LRRC9Q6ZRR7 1453 aa13.44□□□□□ -0.26
SF3B2-216ENST00000534765 FBLN2P98095 1184 aa13.44□□□□□ -0.26
SF3B2-216ENST00000534765 CASKIN1Q8WXD9 1431 aa13.41□□□□□ -0.26
SF3B2-216ENST00000534765 DIEXFQ68CQ4 756 aaKnown RBP13.41□□□□□ -0.26
SF3B2-216ENST00000534765 CHD1O14646 1710 aa13.41□□□□□ -0.26
SF3B2-216ENST00000534765 SYNJ2O15056 1496 aa13.4□□□□□ -0.26
SF3B2-216ENST00000534765 CDK13Q14004 1512 aaKnown RBP13.4□□□□□ -0.26
SF3B2-216ENST00000534765 ERICH6Q7L0X2 663 aa13.4□□□□□ -0.26
SF3B2-216ENST00000534765 FYCO1Q9BQS8 1478 aa13.39□□□□□ -0.27
SF3B2-216ENST00000534765 KIAA0556O60303 1618 aa13.39□□□□□ -0.27
SF3B2-216ENST00000534765 MAGI1Q96QZ7 1491 aaPredicted RBP13.39□□□□□ -0.27
SF3B2-216ENST00000534765 UGGT2Q9NYU1 1516 aa13.39□□□□□ -0.27
SF3B2-216ENST00000534765 APLP2Q06481 763 aa13.38□□□□□ -0.27
SF3B2-216ENST00000534765 RRBP1Q9P2E9 1410 aaKnown RBP13.38□□□□□ -0.27
SF3B2-216ENST00000534765 KIAA0586Q9BVV6 1533 aa13.37□□□□□ -0.27
SF3B2-216ENST00000534765 CCER1Q8TC90 406 aaPredicted RBP13.37□□□□□ -0.27
SF3B2-216ENST00000534765 ERCC6L2Q5T890 1561 aa13.36□□□□□ -0.27
SF3B2-216ENST00000534765 CHMP7Q8WUX9 453 aaPredicted RBP13.36□□□□□ -0.27
SF3B2-216ENST00000534765 NUP160Q12769 1436 aa13.36□□□□□ -0.27
SF3B2-216ENST00000534765 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
SF3B2-216ENST00000534765 ITGAEP38570 1179 aa13.35□□□□□ -0.27
SF3B2-216ENST00000534765 ANP32EQ9BTT0 268 aa13.35□□□□□ -0.27
SF3B2-216ENST00000534765 PLB1Q6P1J6 1458 aa13.33□□□□□ -0.28
SF3B2-216ENST00000534765 FMN1Q68DA7 1419 aa13.32□□□□□ -0.28
SF3B2-216ENST00000534765 NUP153P49790 1475 aaKnown RBP13.31□□□□□ -0.28
SF3B2-216ENST00000534765 CCNB3Q8WWL7 1395 aa13.3□□□□□ -0.28
SF3B2-216ENST00000534765 PTPRKQ15262 1439 aa13.3□□□□□ -0.28
SF3B2-216ENST00000534765 EPRSP07814 1512 aaKnown RBP13.3□□□□□ -0.28
SF3B2-216ENST00000534765 JPH4Q96JJ6 628 aa13.28□□□□□ -0.28
SF3B2-216ENST00000534765 ARHGEF11O15085 1522 aa13.26□□□□□ -0.29
SF3B2-216ENST00000534765 NCOA2Q15596 1464 aa13.25□□□□□ -0.29
SF3B2-216ENST00000534765 RAPGEF6Q8TEU7 1601 aa13.25□□□□□ -0.29
SF3B2-216ENST00000534765 HECW1Q76N89 1606 aa13.24□□□□□ -0.29
SF3B2-216ENST00000534765 KIF14Q15058 1648 aa13.22□□□□□ -0.29
SF3B2-216ENST00000534765 FAM50AQ14320 339 aaKnown RBP13.21□□□□□ -0.29
SF3B2-216ENST00000534765 MTUS2Q5JR59 1369 aa13.21□□□□□ -0.3
SF3B2-216ENST00000534765 PRG4Q92954 1404 aaPredicted RBP13.21□□□□□ -0.3
SF3B2-216ENST00000534765 DHX57Q6P158 1386 aaKnown RBP13.21□□□□□ -0.3
SF3B2-216ENST00000534765 FGD6Q6ZV73 1430 aa13.2□□□□□ -0.3
SF3B2-216ENST00000534765 SHROOM2Q13796 1616 aa13.2□□□□□ -0.3
SF3B2-216ENST00000534765 SUPT6HQ7KZ85 1726 aaKnown RBP13.19□□□□□ -0.3
SF3B2-216ENST00000534765 ZNF644Q9H582 1327 aaPredicted RBP13.19□□□□□ -0.3
SF3B2-216ENST00000534765 KDM6BO15054 1643 aa13.19□□□□□ -0.3
SF3B2-216ENST00000534765 ABCA8O94911 1581 aa13.18□□□□□ -0.3
SF3B2-216ENST00000534765 EHBP1L1Q8N3D4 1523 aa13.18□□□□□ -0.3
SF3B2-216ENST00000534765 RAB3GAP2Q9H2M9 1393 aa13.18□□□□□ -0.3
SF3B2-216ENST00000534765 BCANQ96GW7 911 aa13.17□□□□□ -0.3
SF3B2-216ENST00000534765 PTPN23Q9H3S7 1636 aa13.16□□□□□ -0.3
SF3B2-216ENST00000534765 CLASP1Q7Z460 1538 aa13.16□□□□□ -0.3
SF3B2-216ENST00000534765 MAPKBP1O60336 1514 aa13.16□□□□□ -0.3
SF3B2-216ENST00000534765 MYOM3Q5VTT5 1437 aa13.15□□□□□ -0.3
SF3B2-216ENST00000534765 CCDC18Q5T9S5 1454 aa13.14□□□□□ -0.31
SF3B2-216ENST00000534765 ATP10BO94823 1461 aa13.14□□□□□ -0.31
SF3B2-216ENST00000534765 AEBP2Q6ZN18 517 aaPredicted RBP13.1□□□□□ -0.31
SF3B2-216ENST00000534765 CHIC2Q9UKJ5 165 aa13.09□□□□□ -0.31
SF3B2-216ENST00000534765 DENND4BO75064 1496 aaPredicted RBP13.09□□□□□ -0.31
SF3B2-216ENST00000534765 CDC42BPAQ5VT25 1732 aa13.08□□□□□ -0.32
SF3B2-216ENST00000534765 CARMIL2Q6F5E8 1435 aa13.07□□□□□ -0.32
SF3B2-216ENST00000534765 TCOF1Q13428 1488 aaKnown RBP13.07□□□□□ -0.32
SF3B2-216ENST00000534765 SETD5Q9C0A6 1442 aa13.06□□□□□ -0.32
SF3B2-216ENST00000534765 PTPRGP23470 1445 aa13.06□□□□□ -0.32
SF3B2-216ENST00000534765 NAIPQ13075 1403 aa13.05□□□□□ -0.32
SF3B2-216ENST00000534765 ADCY10Q96PN6 1610 aa13.05□□□□□ -0.32
SF3B2-216ENST00000534765 GPATCH8Q9UKJ3 1502 aaKnown RBP13.05□□□□□ -0.32
SF3B2-216ENST00000534765 SIN3AQ96ST3 1273 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms