RNA–Protein interactions for RNA: ENST00000534765.1

SF3B2-216, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 3,932 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-216ENST00000534765 NISCHQ9Y2I1 1504 aa19.74■□□□□ 0.75
SF3B2-216ENST00000534765 CCDC180Q9P1Z9 1646 aa16.98■□□□□ 0.31
SF3B2-216ENST00000534765 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
SF3B2-216ENST00000534765 SHROOM4Q9ULL8 1493 aa16.51■□□□□ 0.23
SF3B2-216ENST00000534765 DCAF8L2P0C7V8 631 aa16.39■□□□□ 0.21
SF3B2-216ENST00000534765 ABCC9O60706 1549 aa16.24■□□□□ 0.19
SF3B2-216ENST00000534765 DCAF1Q9Y4B6 1507 aa16.11■□□□□ 0.17
SF3B2-216ENST00000534765 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
SF3B2-216ENST00000534765 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.12
SF3B2-216ENST00000534765 MYO15BQ96JP2 1530 aa15.81■□□□□ 0.12
SF3B2-216ENST00000534765 NACADO15069 1562 aa15.76■□□□□ 0.11
SF3B2-216ENST00000534765 UNC13AQ9UPW8 1703 aa15.69■□□□□ 0.1
SF3B2-216ENST00000534765 RB1CC1Q8TDY2 1594 aa15.62■□□□□ 0.09
SF3B2-216ENST00000534765 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
SF3B2-216ENST00000534765 BICRAQ9NZM4 1560 aa15.45■□□□□ 0.06
SF3B2-216ENST00000534765 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
SF3B2-216ENST00000534765 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.062e-10■■□□□ 14.2
SF3B2-216ENST00000534765 MROH2BQ7Z745 1585 aa15.42■□□□□ 0.06
SF3B2-216ENST00000534765 WIZO95785 1651 aa15.34■□□□□ 0.05
SF3B2-216ENST00000534765 CHIC1Q5VXU3 224 aa15.17■□□□□ 0.02
SF3B2-216ENST00000534765 SMARCA4P51532 1647 aa15.17■□□□□ 0.02
SF3B2-216ENST00000534765 BAZ1AQ9NRL2 1556 aaPredicted RBP15.12■□□□□ 0.01
SF3B2-216ENST00000534765 PELP1Q8IZL8 1130 aaKnown RBP15.09■□□□□ 0.01
SF3B2-216ENST00000534765 EIF4G1Q04637 1599 aaKnown RBP14.95□□□□□ -0.02
SF3B2-216ENST00000534765 TOP2AP11388 1531 aaKnown RBP14.94□□□□□ -0.02
SF3B2-216ENST00000534765 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
SF3B2-216ENST00000534765 CCDC88BA6NC98 1476 aa14.93□□□□□ -0.02
SF3B2-216ENST00000534765 PEG3Q9GZU2 1588 aa14.89□□□□□ -0.03
SF3B2-216ENST00000534765 ATAD2BQ9ULI0 1458 aa14.87□□□□□ -0.03
SF3B2-216ENST00000534765 ABCC8Q09428 1581 aa14.81□□□□□ -0.04
SF3B2-216ENST00000534765 LOC105371045A0A1W2PR82 267 aa14.8□□□□□ -0.04
SF3B2-216ENST00000534765 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
SF3B2-216ENST00000534765 PPARGC1BQ86YN6 1023 aaKnown RBP14.71□□□□□ -0.05
SF3B2-216ENST00000534765 DNAJC5BQ9UF47 199 aa14.69□□□□□ -0.06
SF3B2-216ENST00000534765 TRIM41Q8WV44 630 aa14.67□□□□□ -0.06
SF3B2-216ENST00000534765 FAM9AQ8IZU1 332 aaPredicted RBP14.67□□□□□ -0.06
SF3B2-216ENST00000534765 MYT1Q01538 1121 aa14.66□□□□□ -0.06
SF3B2-216ENST00000534765 HRCP23327 699 aa14.66□□□□□ -0.06
SF3B2-216ENST00000534765 CC2D2AQ9P2K1 1620 aa14.66□□□□□ -0.06
SF3B2-216ENST00000534765 EHMT2Q96KQ7 1210 aa14.64□□□□□ -0.07
SF3B2-216ENST00000534765 NCAPD3P42695 1498 aa14.62□□□□□ -0.07
SF3B2-216ENST00000534765 HMGXB3Q12766 1538 aa14.58□□□□□ -0.08
SF3B2-216ENST00000534765 RUSC2Q8N2Y8 1516 aa14.57□□□□□ -0.08
SF3B2-216ENST00000534765 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
SF3B2-216ENST00000534765 PCGF6Q9BYE7 350 aa14.55□□□□□ -0.08
SF3B2-216ENST00000534765 SOGA1O94964 1423 aa14.51□□□□□ -0.09
SF3B2-216ENST00000534765 WRNQ14191 1432 aaPredicted RBP eCLIP14.42□□□□□ -0.1
SF3B2-216ENST00000534765 NESP48681 1621 aa14.42□□□□□ -0.1
SF3B2-216ENST00000534765 CFTRP13569 1480 aa14.39□□□□□ -0.11
SF3B2-216ENST00000534765 CUX1P39880 1505 aa14.37□□□□□ -0.11
SF3B2-216ENST00000534765 TOP2BQ02880 1626 aa14.32□□□□□ -0.12
SF3B2-216ENST00000534765 PRDM2Q13029 1718 aa14.31□□□□□ -0.12
SF3B2-216ENST00000534765 BIVM-ERCC5R4GMW8 1640 aa14.3□□□□□ -0.12
SF3B2-216ENST00000534765 CADPSQ9ULU8 1353 aa14.28□□□□□ -0.12
SF3B2-216ENST00000534765 SCAF1Q9H7N4 1312 aaKnown RBP14.27□□□□□ -0.13
SF3B2-216ENST00000534765 FANCD2Q9BXW9 1451 aa14.18□□□□□ -0.14
SF3B2-216ENST00000534765 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
SF3B2-216ENST00000534765 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
SF3B2-216ENST00000534765 RAPGEF2Q9Y4G8 1499 aa14.16□□□□□ -0.14
SF3B2-216ENST00000534765 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
SF3B2-216ENST00000534765 RAD54L2Q9Y4B4 1467 aa14.11□□□□□ -0.15
SF3B2-216ENST00000534765 URB2Q14146 1524 aaKnown RBP14.11□□□□□ -0.15
SF3B2-216ENST00000534765 CEP162Q5TB80 1403 aa14.08□□□□□ -0.16
SF3B2-216ENST00000534765 TOPBP1Q92547 1522 aa14.07□□□□□ -0.16
SF3B2-216ENST00000534765 KIF21BO75037 1637 aa14.06□□□□□ -0.16
SF3B2-216ENST00000534765 LAMC3Q9Y6N6 1575 aa14.06□□□□□ -0.16
SF3B2-216ENST00000534765 RANGAP1P46060 587 aaPredicted RBP14.04□□□□□ -0.16
SF3B2-216ENST00000534765 POLA1P09884 1462 aaPredicted RBP14.04□□□□□ -0.16
SF3B2-216ENST00000534765 EEA1Q15075 1411 aa14.03□□□□□ -0.16
SF3B2-216ENST00000534765 UBTFP17480 764 aaKnown RBP14.02□□□□□ -0.16
SF3B2-216ENST00000534765 GOLGA3Q08378 1498 aa14.02□□□□□ -0.16
SF3B2-216ENST00000534765 PRXQ9BXM0 1461 aa14.02□□□□□ -0.16
SF3B2-216ENST00000534765 DNMBPQ6XZF7 1577 aa14.02□□□□□ -0.17
SF3B2-216ENST00000534765 TNIKQ9UKE5 1360 aa14.02□□□□□ -0.17
SF3B2-216ENST00000534765 CUX2O14529 1486 aa14.01□□□□□ -0.17
SF3B2-216ENST00000534765 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
SF3B2-216ENST00000534765 TTBK1Q5TCY1 1321 aaPredicted RBP13.99□□□□□ -0.17
SF3B2-216ENST00000534765 IGF1RP08069 1367 aa13.98□□□□□ -0.17
SF3B2-216ENST00000534765 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
SF3B2-216ENST00000534765 KIF27Q86VH2 1401 aa13.94□□□□□ -0.18
SF3B2-216ENST00000534765 GTF3C3Q9Y5Q9 886 aa13.94□□□□□ -0.18
SF3B2-216ENST00000534765 TDRD9Q8NDG6 1382 aaKnown RBP13.91□□□□□ -0.18
SF3B2-216ENST00000534765 TARBP1Q13395 1621 aaKnown RBP13.91□□□□□ -0.18
SF3B2-216ENST00000534765 ABCA10Q8WWZ4 1543 aa13.9□□□□□ -0.18
SF3B2-216ENST00000534765 PDS5BQ9NTI5 1447 aa13.89□□□□□ -0.19
SF3B2-216ENST00000534765 ERICH3Q5RHP9 1530 aa13.88□□□□□ -0.19
SF3B2-216ENST00000534765 CLIP1P30622 1438 aa13.87□□□□□ -0.19
SF3B2-216ENST00000534765 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
SF3B2-216ENST00000534765 ABCA5Q8WWZ7 1642 aa13.87□□□□□ -0.19
SF3B2-216ENST00000534765 TRIM26Q12899 539 aaPredicted RBP13.85□□□□□ -0.19
SF3B2-216ENST00000534765 ZNF608Q9ULD9 1512 aaPredicted RBP13.85□□□□□ -0.19
SF3B2-216ENST00000534765 CENPBP07199 599 aaPredicted RBP13.84□□□□□ -0.19
SF3B2-216ENST00000534765 CARMIL1Q5VZK9 1371 aa13.83□□□□□ -0.2
SF3B2-216ENST00000534765 AQRO60306 1485 aaKnown RBP eCLIP13.83□□□□□ -0.24e-10■■■■□ 21.8
SF3B2-216ENST00000534765 BCL11AQ9H165 835 aa13.83□□□□□ -0.2
SF3B2-216ENST00000534765 THOC2Q8NI27 1593 aaKnown RBP13.81□□□□□ -0.2
SF3B2-216ENST00000534765 ARHGAP35Q9NRY4 1499 aa13.81□□□□□ -0.2
SF3B2-216ENST00000534765 MRC2Q9UBG0 1479 aa13.8□□□□□ -0.2
SF3B2-216ENST00000534765 NEUROD1Q13562 356 aa13.78□□□□□ -0.2
SF3B2-216ENST00000534765 ACIN1Q9UKV3 1341 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms