RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SYNJ2O15056 1496 aa13.15□□□□□ -0.3
SF3A1-210ENST00000498259 VPS8Q8N3P4 1428 aa13.14□□□□□ -0.31
SF3A1-210ENST00000498259 EFCAB5A4FU69 1503 aa13.13□□□□□ -0.31
SF3A1-210ENST00000498259 CTTNBP2Q8WZ74 1663 aa13.12□□□□□ -0.31
SF3A1-210ENST00000498259 FBLN2P98095 1184 aa13.11□□□□□ -0.31
SF3A1-210ENST00000498259 GRIN2AQ12879 1464 aa13.1□□□□□ -0.31
SF3A1-210ENST00000498259 KIAA0586Q9BVV6 1533 aa13.09□□□□□ -0.31
SF3A1-210ENST00000498259 TRIM26Q12899 539 aaPredicted RBP13.09□□□□□ -0.31
SF3A1-210ENST00000498259 ARHGAP35Q9NRY4 1499 aa13.08□□□□□ -0.32
SF3A1-210ENST00000498259 FMN1Q68DA7 1419 aa13.07□□□□□ -0.32
SF3A1-210ENST00000498259 IQGAP2Q13576 1575 aa13.06□□□□□ -0.32
SF3A1-210ENST00000498259 ARAP1Q96P48 1450 aa13.04□□□□□ -0.32
SF3A1-210ENST00000498259 NUP160Q12769 1436 aa13.02□□□□□ -0.33
SF3A1-210ENST00000498259 CARMIL2Q6F5E8 1435 aa13.01□□□□□ -0.33
SF3A1-210ENST00000498259 UGGT2Q9NYU1 1516 aa13□□□□□ -0.33
SF3A1-210ENST00000498259 P3H3Q8IVL6 736 aa12.99□□□□□ -0.33
SF3A1-210ENST00000498259 SAMD9Q5K651 1589 aa12.98□□□□□ -0.33
SF3A1-210ENST00000498259 MAP3K1Q13233 1512 aa12.98□□□□□ -0.33
SF3A1-210ENST00000498259 JPH4Q96JJ6 628 aa12.98□□□□□ -0.33
SF3A1-210ENST00000498259 FHOD3Q2V2M9 1422 aa12.96□□□□□ -0.33
SF3A1-210ENST00000498259 CASKIN1Q8WXD9 1431 aa12.96□□□□□ -0.33
SF3A1-210ENST00000498259 PCGF6Q9BYE7 350 aa12.96□□□□□ -0.33
SF3A1-210ENST00000498259 FYCO1Q9BQS8 1478 aa12.96□□□□□ -0.34
SF3A1-210ENST00000498259 ATP1B4Q9UN42 357 aaPredicted RBP12.95□□□□□ -0.34
SF3A1-210ENST00000498259 CEP170Q5SW79 1584 aa12.94□□□□□ -0.34
SF3A1-210ENST00000498259 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
SF3A1-210ENST00000498259 KIAA0556O60303 1618 aa12.89□□□□□ -0.35
SF3A1-210ENST00000498259 CDK11AQ9UQ88 783 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-210ENST00000498259 CCDC18Q5T9S5 1454 aa12.89□□□□□ -0.35
SF3A1-210ENST00000498259 CHD1O14646 1710 aa12.88□□□□□ -0.35
SF3A1-210ENST00000498259 DISP1Q96F81 1524 aa12.88□□□□□ -0.35
SF3A1-210ENST00000498259 OSCARQ8IYS5 282 aa12.86□□□□□ -0.35
SF3A1-210ENST00000498259 PCF11O94913 1555 aaKnown RBP12.86□□□□□ -0.35
SF3A1-210ENST00000498259 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
SF3A1-210ENST00000498259 HECW1Q76N89 1606 aa12.85□□□□□ -0.35
SF3A1-210ENST00000498259 PRG4Q92954 1404 aaPredicted RBP12.85□□□□□ -0.35
SF3A1-210ENST00000498259 LRRC9Q6ZRR7 1453 aa12.84□□□□□ -0.35
SF3A1-210ENST00000498259 MTUS2Q5JR59 1369 aa12.83□□□□□ -0.36
SF3A1-210ENST00000498259 TTBK1Q5TCY1 1321 aaPredicted RBP12.83□□□□□ -0.36
SF3A1-210ENST00000498259 PTPRGP23470 1445 aa12.82□□□□□ -0.36
SF3A1-210ENST00000498259 KANK4Q5T7N3 995 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-210ENST00000498259 CFAP43Q8NDM7 1665 aa12.8□□□□□ -0.36
SF3A1-210ENST00000498259 SHROOM2Q13796 1616 aa12.8□□□□□ -0.36
SF3A1-210ENST00000498259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-210ENST00000498259 HNRNPUL2Q1KMD3 747 aaKnown RBP12.79□□□□□ -0.36
SF3A1-210ENST00000498259 EPRSP07814 1512 aaKnown RBP12.78□□□□□ -0.36
SF3A1-210ENST00000498259 CLASP1Q7Z460 1538 aa12.78□□□□□ -0.36
SF3A1-210ENST00000498259 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
SF3A1-210ENST00000498259 RAPGEF6Q8TEU7 1601 aa12.77□□□□□ -0.36
SF3A1-210ENST00000498259 EHBP1L1Q8N3D4 1523 aa12.76□□□□□ -0.37
SF3A1-210ENST00000498259 PLEKHD1A6NEE1 506 aa12.74□□□□□ -0.37
SF3A1-210ENST00000498259 UACAQ9BZF9 1416 aa12.73□□□□□ -0.37
SF3A1-210ENST00000498259 RRBP1Q9P2E9 1410 aaKnown RBP12.73□□□□□ -0.37
SF3A1-210ENST00000498259 CCNB3Q8WWL7 1395 aa12.73□□□□□ -0.37
SF3A1-210ENST00000498259 NUP153P49790 1475 aaKnown RBP12.72□□□□□ -0.37
SF3A1-210ENST00000498259 PLB1Q6P1J6 1458 aa12.72□□□□□ -0.37
SF3A1-210ENST00000498259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.71□□□□□ -0.37
SF3A1-210ENST00000498259 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.38
SF3A1-210ENST00000498259 ABCA8O94911 1581 aa12.7□□□□□ -0.38
SF3A1-210ENST00000498259 UHRF1BP1LA0JNW5 1464 aa12.67□□□□□ -0.38
SF3A1-210ENST00000498259 NCOA2Q15596 1464 aa12.67□□□□□ -0.38
SF3A1-210ENST00000498259 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-210ENST00000498259 TROQ12816 1431 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-210ENST00000498259 MYOM3Q5VTT5 1437 aa12.66□□□□□ -0.38
SF3A1-210ENST00000498259 CDK13Q14004 1512 aaKnown RBP12.66□□□□□ -0.38
SF3A1-210ENST00000498259 PHLDB1Q86UU1 1377 aa12.66□□□□□ -0.38
SF3A1-210ENST00000498259 MIA2Q96PC5 1412 aa12.65□□□□□ -0.38
SF3A1-210ENST00000498259 ARID3CA6NKF2 412 aa12.65□□□□□ -0.38
SF3A1-210ENST00000498259 NPM1P06748 294 aaKnown RBP eCLIP12.65□□□□□ -0.38
SF3A1-210ENST00000498259 FAM50AQ14320 339 aaKnown RBP12.65□□□□□ -0.38
SF3A1-210ENST00000498259 ABCC2Q92887 1545 aa12.65□□□□□ -0.38
SF3A1-210ENST00000498259 ATP10BO94823 1461 aa12.65□□□□□ -0.38
SF3A1-210ENST00000498259 FGD6Q6ZV73 1430 aa12.63□□□□□ -0.39
SF3A1-210ENST00000498259 LRRIQ1Q96JM4 1722 aa12.63□□□□□ -0.39
SF3A1-210ENST00000498259 ACIN1Q9UKV3 1341 aaKnown RBP12.62□□□□□ -0.39
SF3A1-210ENST00000498259 ARHGEF11O15085 1522 aa12.62□□□□□ -0.39
SF3A1-210ENST00000498259 MAGI3Q5TCQ9 1506 aa12.59□□□□□ -0.39
SF3A1-210ENST00000498259 CFDP1Q9UEE9 299 aaPredicted RBP12.59□□□□□ -0.39
SF3A1-210ENST00000498259 ERCC6L2Q5T890 1561 aa12.59□□□□□ -0.39
SF3A1-210ENST00000498259 KIF14Q15058 1648 aa12.59□□□□□ -0.39
SF3A1-210ENST00000498259 KDM5BQ9UGL1 1544 aa12.58□□□□□ -0.4
SF3A1-210ENST00000498259 ITGAEP38570 1179 aa12.57□□□□□ -0.4
SF3A1-210ENST00000498259 CCER1Q8TC90 406 aaPredicted RBP12.57□□□□□ -0.4
SF3A1-210ENST00000498259 ADCY10Q96PN6 1610 aa12.57□□□□□ -0.4
SF3A1-210ENST00000498259 HRCP23327 699 aa12.56□□□□□ -0.4
SF3A1-210ENST00000498259 ITSN2Q9NZM3 1697 aa12.55□□□□□ -0.4
SF3A1-210ENST00000498259 RSPH4AQ5TD94 716 aa12.55□□□□□ -0.4
SF3A1-210ENST00000498259 TCOF1Q13428 1488 aaKnown RBP12.54□□□□□ -0.4
SF3A1-210ENST00000498259 PTPN23Q9H3S7 1636 aa12.54□□□□□ -0.4
SF3A1-210ENST00000498259 GPATCH8Q9UKJ3 1502 aaKnown RBP12.52□□□□□ -0.41
SF3A1-210ENST00000498259 CLSPNQ9HAW4 1339 aa12.51□□□□□ -0.41
SF3A1-210ENST00000498259 SETD5Q9C0A6 1442 aa12.51□□□□□ -0.41
SF3A1-210ENST00000498259 KCNH8Q96L42 1107 aa12.5□□□□□ -0.41
SF3A1-210ENST00000498259 ZCCHC11Q5TAX3 1644 aaKnown RBP12.5□□□□□ -0.41
SF3A1-210ENST00000498259 ABCC10Q5T3U5 1492 aa12.48□□□□□ -0.41
SF3A1-210ENST00000498259 WDR7Q9Y4E6 1490 aa12.48□□□□□ -0.41
SF3A1-210ENST00000498259 TSPY4P0CV99 314 aa12.48□□□□□ -0.41
SF3A1-210ENST00000498259 TSPY10P0CW01 314 aa12.48□□□□□ -0.41
SF3A1-210ENST00000498259 ZNF777Q9ULD5 760 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-210ENST00000498259 PLEKHH2Q8IVE3 1493 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms