RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
SF3A1-210ENST00000498259 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
SF3A1-210ENST00000498259 ZCCHC6Q5VYS8 1495 aaKnown RBP15.93■□□□□ 0.14
SF3A1-210ENST00000498259 DCAF1Q9Y4B6 1507 aa15.8■□□□□ 0.12
SF3A1-210ENST00000498259 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
SF3A1-210ENST00000498259 ABCC9O60706 1549 aa15.7■□□□□ 0.1
SF3A1-210ENST00000498259 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
SF3A1-210ENST00000498259 NACADO15069 1562 aa15.57■□□□□ 0.08
SF3A1-210ENST00000498259 RB1CC1Q8TDY2 1594 aa15.43■□□□□ 0.06
SF3A1-210ENST00000498259 SHROOM4Q9ULL8 1493 aa15.37■□□□□ 0.05
SF3A1-210ENST00000498259 SCRIBQ14160 1630 aa15.18■□□□□ 0.02
SF3A1-210ENST00000498259 UNC13AQ9UPW8 1703 aa14.89□□□□□ -0.03
SF3A1-210ENST00000498259 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
SF3A1-210ENST00000498259 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
SF3A1-210ENST00000498259 BICRAQ9NZM4 1560 aa14.8□□□□□ -0.04
SF3A1-210ENST00000498259 AEBP2Q6ZN18 517 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-210ENST00000498259 BAZ1AQ9NRL2 1556 aaPredicted RBP14.74□□□□□ -0.05
SF3A1-210ENST00000498259 RSF1Q96T23 1441 aaPredicted RBP14.71□□□□□ -0.05
SF3A1-210ENST00000498259 CECR2Q9BXF3 1484 aa14.67□□□□□ -0.06
SF3A1-210ENST00000498259 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
SF3A1-210ENST00000498259 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
SF3A1-210ENST00000498259 SMARCA2P51531 1590 aa14.47□□□□□ -0.09
SF3A1-210ENST00000498259 PEG3Q9GZU2 1588 aa14.47□□□□□ -0.09
SF3A1-210ENST00000498259 CHIC1Q5VXU3 224 aa14.46□□□□□ -0.09
SF3A1-210ENST00000498259 WIZO95785 1651 aa14.46□□□□□ -0.1
SF3A1-210ENST00000498259 EIF4G1Q04637 1599 aaKnown RBP14.44□□□□□ -0.1
SF3A1-210ENST00000498259 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
SF3A1-210ENST00000498259 ATAD2BQ9ULI0 1458 aa14.4□□□□□ -0.1
SF3A1-210ENST00000498259 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
SF3A1-210ENST00000498259 NCAPD3P42695 1498 aa14.34□□□□□ -0.11
SF3A1-210ENST00000498259 HMGXB3Q12766 1538 aa14.31□□□□□ -0.12
SF3A1-210ENST00000498259 CCDC88BA6NC98 1476 aa14.24□□□□□ -0.13
SF3A1-210ENST00000498259 CC2D2AQ9P2K1 1620 aa14.22□□□□□ -0.13
SF3A1-210ENST00000498259 TRIM41Q8WV44 630 aa14.08□□□□□ -0.16
SF3A1-210ENST00000498259 CFTRP13569 1480 aa13.99□□□□□ -0.17
SF3A1-210ENST00000498259 CADPSQ9ULU8 1353 aa13.98□□□□□ -0.17
SF3A1-210ENST00000498259 WRNQ14191 1432 aaPredicted RBP eCLIP13.9□□□□□ -0.18
SF3A1-210ENST00000498259 LAMC3Q9Y6N6 1575 aa13.88□□□□□ -0.19
SF3A1-210ENST00000498259 PRDM2Q13029 1718 aa13.84□□□□□ -0.19
SF3A1-210ENST00000498259 PDS5BQ9NTI5 1447 aa13.84□□□□□ -0.19
SF3A1-210ENST00000498259 ABCC8Q09428 1581 aa13.83□□□□□ -0.2
SF3A1-210ENST00000498259 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
SF3A1-210ENST00000498259 EEA1Q15075 1411 aa13.8□□□□□ -0.2
SF3A1-210ENST00000498259 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
SF3A1-210ENST00000498259 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
SF3A1-210ENST00000498259 CEP164Q9UPV0 1460 aa13.74□□□□□ -0.21
SF3A1-210ENST00000498259 BIVM-ERCC5R4GMW8 1640 aa13.72□□□□□ -0.21
SF3A1-210ENST00000498259 SYNJ1O43426 1573 aa13.71□□□□□ -0.21
SF3A1-210ENST00000498259 NESP48681 1621 aa13.71□□□□□ -0.22
SF3A1-210ENST00000498259 FAM9AQ8IZU1 332 aaPredicted RBP13.68□□□□□ -0.22
SF3A1-210ENST00000498259 CUX1P39880 1505 aa13.68□□□□□ -0.22
SF3A1-210ENST00000498259 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
SF3A1-210ENST00000498259 DNMBPQ6XZF7 1577 aa13.65□□□□□ -0.22
SF3A1-210ENST00000498259 KIF27Q86VH2 1401 aa13.62□□□□□ -0.23
SF3A1-210ENST00000498259 SOGA1O94964 1423 aa13.61□□□□□ -0.23
SF3A1-210ENST00000498259 TOPBP1Q92547 1522 aa13.6□□□□□ -0.23
SF3A1-210ENST00000498259 ERCC6Q03468 1493 aa13.59□□□□□ -0.23
SF3A1-210ENST00000498259 FGD5Q6ZNL6 1462 aa13.57□□□□□ -0.24
SF3A1-210ENST00000498259 MRC2Q9UBG0 1479 aa13.57□□□□□ -0.24
SF3A1-210ENST00000498259 LOC105371045A0A1W2PR82 267 aa13.56□□□□□ -0.24
SF3A1-210ENST00000498259 KIF21AQ7Z4S6 1674 aa13.54□□□□□ -0.24
SF3A1-210ENST00000498259 URB2Q14146 1524 aaKnown RBP13.54□□□□□ -0.24
SF3A1-210ENST00000498259 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
SF3A1-210ENST00000498259 CUX2O14529 1486 aa13.51□□□□□ -0.25
SF3A1-210ENST00000498259 ABCA10Q8WWZ4 1543 aa13.5□□□□□ -0.25
SF3A1-210ENST00000498259 GOLGA3Q08378 1498 aa13.5□□□□□ -0.25
SF3A1-210ENST00000498259 UBTFP17480 764 aaKnown RBP13.5□□□□□ -0.25
SF3A1-210ENST00000498259 RUSC2Q8N2Y8 1516 aa13.49□□□□□ -0.25
SF3A1-210ENST00000498259 KIF21BO75037 1637 aa13.47□□□□□ -0.25
SF3A1-210ENST00000498259 WDR62O43379 1518 aa13.47□□□□□ -0.25
SF3A1-210ENST00000498259 TNIKQ9UKE5 1360 aa13.45□□□□□ -0.26
SF3A1-210ENST00000498259 ERICH3Q5RHP9 1530 aa13.44□□□□□ -0.26
SF3A1-210ENST00000498259 IFT140Q96RY7 1462 aa13.43□□□□□ -0.26
SF3A1-210ENST00000498259 IGF1RP08069 1367 aa13.43□□□□□ -0.26
SF3A1-210ENST00000498259 PRXQ9BXM0 1461 aa13.42□□□□□ -0.26
SF3A1-210ENST00000498259 RAD54L2Q9Y4B4 1467 aa13.42□□□□□ -0.26
SF3A1-210ENST00000498259 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
SF3A1-210ENST00000498259 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
SF3A1-210ENST00000498259 CARMIL1Q5VZK9 1371 aa13.4□□□□□ -0.26
SF3A1-210ENST00000498259 GAPVD1Q14C86 1478 aa13.39□□□□□ -0.27
SF3A1-210ENST00000498259 RAPGEF2Q9Y4G8 1499 aa13.37□□□□□ -0.27
SF3A1-210ENST00000498259 THOC2Q8NI27 1593 aaKnown RBP13.37□□□□□ -0.27
SF3A1-210ENST00000498259 TDRD9Q8NDG6 1382 aaKnown RBP13.36□□□□□ -0.27
SF3A1-210ENST00000498259 TARBP1Q13395 1621 aaKnown RBP13.35□□□□□ -0.27
SF3A1-210ENST00000498259 CUL7Q14999 1698 aa13.35□□□□□ -0.27
SF3A1-210ENST00000498259 ABCA5Q8WWZ7 1642 aa13.32□□□□□ -0.28
SF3A1-210ENST00000498259 CEP162Q5TB80 1403 aa13.32□□□□□ -0.28
SF3A1-210ENST00000498259 GRIN2BQ13224 1484 aa13.32□□□□□ -0.28
SF3A1-210ENST00000498259 FHAD1B1AJZ9 1412 aa13.28□□□□□ -0.28
SF3A1-210ENST00000498259 CLIP1P30622 1438 aa13.27□□□□□ -0.29
SF3A1-210ENST00000498259 AQRO60306 1485 aaKnown RBP eCLIP13.26□□□□□ -0.291e-8■■■■■ 30.8
SF3A1-210ENST00000498259 MAGI1Q96QZ7 1491 aaPredicted RBP13.23□□□□□ -0.29
SF3A1-210ENST00000498259 PBRM1Q86U86 1689 aa13.21□□□□□ -0.29
SF3A1-210ENST00000498259 ZNF608Q9ULD9 1512 aaPredicted RBP13.21□□□□□ -0.29
SF3A1-210ENST00000498259 APLP2Q06481 763 aa13.2□□□□□ -0.3
SF3A1-210ENST00000498259 EIF4G3O43432 1585 aaKnown RBP13.2□□□□□ -0.3
SF3A1-210ENST00000498259 CHMP7Q8WUX9 453 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-210ENST00000498259 ADAMTS12P58397 1594 aa13.17□□□□□ -0.3
SF3A1-210ENST00000498259 RANGAP1P46060 587 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-210ENST00000498259 SNAPC4Q5SXM2 1469 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms