RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 FHAD1B1AJZ9 1412 aa41.06■■■■■ 4.16
LDB1-202ENST00000425280 ADAMTS12P58397 1594 aa41.06■■■■■ 4.16
LDB1-202ENST00000425280 EIF4G3O43432 1585 aaKnown RBP41.02■■■■■ 4.16
LDB1-202ENST00000425280 APLP2Q06481 763 aa41.02■■■■■ 4.16
LDB1-202ENST00000425280 EFCAB5A4FU69 1503 aa40.93■■■■■ 4.14
LDB1-202ENST00000425280 HRCP23327 699 aa40.91■■■■■ 4.14
LDB1-202ENST00000425280 SNAPC4Q5SXM2 1469 aa40.86■■■■■ 4.13
LDB1-202ENST00000425280 P3H3Q8IVL6 736 aa40.81■■■■■ 4.12
LDB1-202ENST00000425280 FHOD3Q2V2M9 1422 aa40.79■■■■■ 4.12
LDB1-202ENST00000425280 SAMD9Q5K651 1589 aa40.76■■■■■ 4.12
LDB1-202ENST00000425280 MAGI1Q96QZ7 1491 aaPredicted RBP40.73■■■■■ 4.11
LDB1-202ENST00000425280 KANK4Q5T7N3 995 aaPredicted RBP40.68■■■■■ 4.1
LDB1-202ENST00000425280 IQGAP2Q13576 1575 aa40.67■■■■■ 4.1
LDB1-202ENST00000425280 PCF11O94913 1555 aaKnown RBP40.66■■■■■ 4.1
LDB1-202ENST00000425280 GRIN2AQ12879 1464 aa40.65■■■■■ 4.1
LDB1-202ENST00000425280 MAP3K1Q13233 1512 aa40.63■■■■■ 4.09
LDB1-202ENST00000425280 SYNJ2O15056 1496 aa40.6■■■■■ 4.09
LDB1-202ENST00000425280 TIAM1Q13009 1591 aa40.59■■■■■ 4.09
LDB1-202ENST00000425280 FMN1Q68DA7 1419 aa40.57■■■■■ 4.09
LDB1-202ENST00000425280 FYCO1Q9BQS8 1478 aa40.56■■■■■ 4.08
LDB1-202ENST00000425280 CASKIN1Q8WXD9 1431 aa40.55■■■■■ 4.08
LDB1-202ENST00000425280 KIAA0586Q9BVV6 1533 aa40.52■■■■■ 4.08
LDB1-202ENST00000425280 CHMP7Q8WUX9 453 aaPredicted RBP40.49■■■■■ 4.07
LDB1-202ENST00000425280 CFAP43Q8NDM7 1665 aa40.49■■■■■ 4.07
LDB1-202ENST00000425280 UGGT2Q9NYU1 1516 aa40.48■■■■■ 4.07
LDB1-202ENST00000425280 CEP170Q5SW79 1584 aa40.41■■■■■ 4.06
LDB1-202ENST00000425280 LRRC9Q6ZRR7 1453 aa40.41■■■■■ 4.06
LDB1-202ENST00000425280 ATP1B4Q9UN42 357 aaPredicted RBP40.41■■■■■ 4.06
LDB1-202ENST00000425280 FBLN2P98095 1184 aa40.38■■■■■ 4.05
LDB1-202ENST00000425280 NUP160Q12769 1436 aa40.33■■■■■ 4.05
LDB1-202ENST00000425280 DISP1Q96F81 1524 aa40.28■■■■■ 4.04
LDB1-202ENST00000425280 RRBP1Q9P2E9 1410 aaKnown RBP40.27■■■■■ 4.04
LDB1-202ENST00000425280 KIAA0556O60303 1618 aa40.27■■■■■ 4.04
LDB1-202ENST00000425280 LRRIQ1Q96JM4 1722 aa40.25■■■■■ 4.03
LDB1-202ENST00000425280 HNRNPUL2Q1KMD3 747 aaKnown RBP40.22■■■■■ 4.03
LDB1-202ENST00000425280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.18■■■■■ 4.02
LDB1-202ENST00000425280 ZEB1P37275 1124 aaPredicted RBP40.18■■■■■ 4.02
LDB1-202ENST00000425280 HECW1Q76N89 1606 aa40.13■■■■■ 4.01
LDB1-202ENST00000425280 CCNB3Q8WWL7 1395 aa40.12■■■■■ 4.01
LDB1-202ENST00000425280 PHLDB1Q86UU1 1377 aa40.09■■■■■ 4.01
LDB1-202ENST00000425280 CHD1O14646 1710 aa40.08■■■■■ 4.01
LDB1-202ENST00000425280 CCDC18Q5T9S5 1454 aa40.06■■■■■ 4
LDB1-202ENST00000425280 JPH4Q96JJ6 628 aa40.06■■■■■ 4
LDB1-202ENST00000425280 CCER1Q8TC90 406 aaPredicted RBP40.04■■■■■ 4
LDB1-202ENST00000425280 MTUS2Q5JR59 1369 aa40.01■■■■■ 4
LDB1-202ENST00000425280 EPRSP07814 1512 aaKnown RBP39.99■■■■□ 3.99
LDB1-202ENST00000425280 CARMIL2Q6F5E8 1435 aa39.98■■■■□ 3.99
LDB1-202ENST00000425280 EHBP1L1Q8N3D4 1523 aa39.94■■■■□ 3.98
LDB1-202ENST00000425280 RAPGEF6Q8TEU7 1601 aa39.92■■■■□ 3.98
LDB1-202ENST00000425280 MAGI3Q5TCQ9 1506 aa39.91■■■■□ 3.98
LDB1-202ENST00000425280 CDK13Q14004 1512 aaKnown RBP39.9■■■■□ 3.98
LDB1-202ENST00000425280 SUPT6HQ7KZ85 1726 aaKnown RBP39.86■■■■□ 3.97
LDB1-202ENST00000425280 NUP153P49790 1475 aaKnown RBP39.85■■■■□ 3.97
LDB1-202ENST00000425280 NCOA2Q15596 1464 aa39.84■■■■□ 3.97
LDB1-202ENST00000425280 PRG4Q92954 1404 aaPredicted RBP39.78■■■■□ 3.96
LDB1-202ENST00000425280 ARID3CA6NKF2 412 aa39.77■■■■□ 3.96
LDB1-202ENST00000425280 PLB1Q6P1J6 1458 aa39.77■■■■□ 3.96
LDB1-202ENST00000425280 ARHGEF11O15085 1522 aa39.76■■■■□ 3.96
LDB1-202ENST00000425280 FGD6Q6ZV73 1430 aa39.75■■■■□ 3.95
LDB1-202ENST00000425280 FAM50AQ14320 339 aaKnown RBP39.74■■■■□ 3.95
LDB1-202ENST00000425280 ITGAEP38570 1179 aa39.74■■■■□ 3.95
LDB1-202ENST00000425280 SHROOM2Q13796 1616 aa39.73■■■■□ 3.95
LDB1-202ENST00000425280 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.72■■■■□ 3.958e-8■■□□□ 13.5
LDB1-202ENST00000425280 MYOM3Q5VTT5 1437 aa39.7■■■■□ 3.95
LDB1-202ENST00000425280 ABCA8O94911 1581 aa39.65■■■■□ 3.94
LDB1-202ENST00000425280 CLASP1Q7Z460 1538 aa39.59■■■■□ 3.93
LDB1-202ENST00000425280 PTPRGP23470 1445 aa39.56■■■■□ 3.92
LDB1-202ENST00000425280 CDK11AQ9UQ88 783 aaPredicted RBP39.55■■■■□ 3.92
LDB1-202ENST00000425280 PTPN23Q9H3S7 1636 aa39.51■■■■□ 3.92
LDB1-202ENST00000425280 ERCC6L2Q5T890 1561 aa39.48■■■■□ 3.91
LDB1-202ENST00000425280 TROQ12816 1431 aaPredicted RBP39.47■■■■□ 3.91
LDB1-202ENST00000425280 DHX57Q6P158 1386 aaKnown RBP39.45■■■■□ 3.91
LDB1-202ENST00000425280 TCOF1Q13428 1488 aaKnown RBP39.44■■■■□ 3.9
LDB1-202ENST00000425280 SETD5Q9C0A6 1442 aa39.44■■■■□ 3.9
LDB1-202ENST00000425280 RAB3GAP2Q9H2M9 1393 aa39.43■■■■□ 3.9
LDB1-202ENST00000425280 ATP10BO94823 1461 aa39.43■■■■□ 3.9
LDB1-202ENST00000425280 MIA2Q96PC5 1412 aa39.42■■■■□ 3.9
LDB1-202ENST00000425280 ADCY10Q96PN6 1610 aa39.37■■■■□ 3.89
LDB1-202ENST00000425280 PTPRKQ15262 1439 aa39.36■■■■□ 3.89
LDB1-202ENST00000425280 UACAQ9BZF9 1416 aa39.34■■■■□ 3.89
LDB1-202ENST00000425280 KIF14Q15058 1648 aa39.31■■■■□ 3.88
LDB1-202ENST00000425280 CLSPNQ9HAW4 1339 aa39.3■■■■□ 3.88
LDB1-202ENST00000425280 PLEKHD1A6NEE1 506 aa39.27■■■■□ 3.88
LDB1-202ENST00000425280 ABCC2Q92887 1545 aa39.21■■■■□ 3.87
LDB1-202ENST00000425280 HFM1A2PYH4 1435 aa39.2■■■■□ 3.87
LDB1-202ENST00000425280 ITSN2Q9NZM3 1697 aa39.2■■■■□ 3.87
LDB1-202ENST00000425280 GPATCH8Q9UKJ3 1502 aaKnown RBP39.18■■■■□ 3.86
LDB1-202ENST00000425280 ABCC10Q5T3U5 1492 aa39.13■■■■□ 3.86
LDB1-202ENST00000425280 NAIPQ13075 1403 aa39.11■■■■□ 3.85
LDB1-202ENST00000425280 ZNF644Q9H582 1327 aaPredicted RBP39.09■■■■□ 3.85
LDB1-202ENST00000425280 CFDP1Q9UEE9 299 aaPredicted RBP39.07■■■■□ 3.85
LDB1-202ENST00000425280 UHRF1BP1LA0JNW5 1464 aa39.07■■■■□ 3.85
LDB1-202ENST00000425280 DNMT1P26358 1616 aaKnown RBP39.07■■■■□ 3.84
LDB1-202ENST00000425280 CDC42BPAQ5VT25 1732 aa39.06■■■■□ 3.84
LDB1-202ENST00000425280 DAPK1P53355 1430 aa39.05■■■■□ 3.84
LDB1-202ENST00000425280 CAMSAP2Q08AD1 1489 aa39.04■■■■□ 3.84
LDB1-202ENST00000425280 MAPKBP1O60336 1514 aa39.04■■■■□ 3.84
LDB1-202ENST00000425280 AKNAQ7Z591 1439 aa39.03■■■■□ 3.84
LDB1-202ENST00000425280 CHIC2Q9UKJ5 165 aa39.02■■■■□ 3.84
LDB1-202ENST00000425280 OSCARQ8IYS5 282 aa39.02■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 321 ms