RNA–Protein interactions for RNA: ENST00000399126.1

COL25A1-201, Transcript of collagen type XXV alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL25A1, Length 2,674 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1-201ENST00000399126 MYT1Q01538 1121 aa23.48■■□□□ 1.35
COL25A1-201ENST00000399126 CTTNBP2Q8WZ74 1663 aa23.48■■□□□ 1.35
COL25A1-201ENST00000399126 EIF4G3O43432 1585 aaKnown RBP23.46■■□□□ 1.35
COL25A1-201ENST00000399126 GRIN2BQ13224 1484 aa23.45■■□□□ 1.34
COL25A1-201ENST00000399126 ADAMTS12P58397 1594 aa23.44■■□□□ 1.34
COL25A1-201ENST00000399126 P3H3Q8IVL6 736 aa23.43■■□□□ 1.34
COL25A1-201ENST00000399126 FHAD1B1AJZ9 1412 aa23.4■■□□□ 1.34
COL25A1-201ENST00000399126 APLP2Q06481 763 aa23.37■■□□□ 1.33
COL25A1-201ENST00000399126 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
COL25A1-201ENST00000399126 FHOD3Q2V2M9 1422 aa23.35■■□□□ 1.33
COL25A1-201ENST00000399126 PRKCSHP14314 528 aaPredicted RBP23.35■■□□□ 1.33
COL25A1-201ENST00000399126 HRCP23327 699 aa23.31■■□□□ 1.32
COL25A1-201ENST00000399126 KANK4Q5T7N3 995 aaPredicted RBP23.3■■□□□ 1.32
COL25A1-201ENST00000399126 EFCAB5A4FU69 1503 aa23.28■■□□□ 1.32
COL25A1-201ENST00000399126 PCF11O94913 1555 aaKnown RBP23.24■■□□□ 1.31
COL25A1-201ENST00000399126 SAMD9Q5K651 1589 aa23.24■■□□□ 1.31
COL25A1-201ENST00000399126 GRIN2AQ12879 1464 aa23.22■■□□□ 1.31
COL25A1-201ENST00000399126 IQGAP2Q13576 1575 aa23.21■■□□□ 1.31
COL25A1-201ENST00000399126 MAGI1Q96QZ7 1491 aaPredicted RBP23.21■■□□□ 1.31
COL25A1-201ENST00000399126 FBLN2P98095 1184 aa23.18■■□□□ 1.3
COL25A1-201ENST00000399126 ATP1B4Q9UN42 357 aaPredicted RBP23.18■■□□□ 1.3
COL25A1-201ENST00000399126 CHMP7Q8WUX9 453 aaPredicted RBP23.16■■□□□ 1.3
COL25A1-201ENST00000399126 SYNJ2O15056 1496 aa23.15■■□□□ 1.3
COL25A1-201ENST00000399126 TIAM1Q13009 1591 aa23.15■■□□□ 1.3
COL25A1-201ENST00000399126 CEP170Q5SW79 1584 aa23.11■■□□□ 1.29
COL25A1-201ENST00000399126 FMN1Q68DA7 1419 aa23.1■■□□□ 1.29
COL25A1-201ENST00000399126 CASKIN1Q8WXD9 1431 aa23.1■■□□□ 1.29
COL25A1-201ENST00000399126 FYCO1Q9BQS8 1478 aa23.1■■□□□ 1.29
COL25A1-201ENST00000399126 KIAA0586Q9BVV6 1533 aa23.1■■□□□ 1.29
COL25A1-201ENST00000399126 CFAP43Q8NDM7 1665 aa23.07■■□□□ 1.28
COL25A1-201ENST00000399126 MAP3K1Q13233 1512 aa23.07■■□□□ 1.28
COL25A1-201ENST00000399126 UGGT2Q9NYU1 1516 aa23.06■■□□□ 1.28
COL25A1-201ENST00000399126 LRRC9Q6ZRR7 1453 aa23.05■■□□□ 1.28
COL25A1-201ENST00000399126 LRRIQ1Q96JM4 1722 aa23.05■■□□□ 1.28
COL25A1-201ENST00000399126 HNRNPUL2Q1KMD3 747 aaKnown RBP23.04■■□□□ 1.28
COL25A1-201ENST00000399126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.03■■□□□ 1.28
COL25A1-201ENST00000399126 DAXXQ9UER7 740 aaPredicted RBP23.02■■□□□ 1.28
COL25A1-201ENST00000399126 DISP1Q96F81 1524 aa23.01■■□□□ 1.27
COL25A1-201ENST00000399126 NUP160Q12769 1436 aa23■■□□□ 1.27
COL25A1-201ENST00000399126 KIAA0556O60303 1618 aa22.99■■□□□ 1.27
COL25A1-201ENST00000399126 CHD1O14646 1710 aa22.95■■□□□ 1.26
COL25A1-201ENST00000399126 RRBP1Q9P2E9 1410 aaKnown RBP22.94■■□□□ 1.26
COL25A1-201ENST00000399126 PHLDB1Q86UU1 1377 aa22.93■■□□□ 1.26
COL25A1-201ENST00000399126 ARID3CA6NKF2 412 aa22.9■■□□□ 1.26
COL25A1-201ENST00000399126 JPH4Q96JJ6 628 aa22.89■■□□□ 1.26
COL25A1-201ENST00000399126 CCNB3Q8WWL7 1395 aa22.88■■□□□ 1.25
COL25A1-201ENST00000399126 CCER1Q8TC90 406 aaPredicted RBP22.87■■□□□ 1.25
COL25A1-201ENST00000399126 HECW1Q76N89 1606 aa22.86■■□□□ 1.25
COL25A1-201ENST00000399126 CDK13Q14004 1512 aaKnown RBP22.85■■□□□ 1.25
COL25A1-201ENST00000399126 MTUS2Q5JR59 1369 aa22.85■■□□□ 1.25
COL25A1-201ENST00000399126 MAGI3Q5TCQ9 1506 aa22.84■■□□□ 1.25
COL25A1-201ENST00000399126 EPRSP07814 1512 aaKnown RBP22.83■■□□□ 1.24
COL25A1-201ENST00000399126 ITGAEP38570 1179 aa22.81■■□□□ 1.24
COL25A1-201ENST00000399126 CCDC18Q5T9S5 1454 aa22.79■■□□□ 1.24
COL25A1-201ENST00000399126 RAPGEF6Q8TEU7 1601 aa22.78■■□□□ 1.24
COL25A1-201ENST00000399126 CARMIL2Q6F5E8 1435 aa22.77■■□□□ 1.24
COL25A1-201ENST00000399126 NUP153P49790 1475 aaKnown RBP22.77■■□□□ 1.24
COL25A1-201ENST00000399126 PLB1Q6P1J6 1458 aa22.77■■□□□ 1.24
COL25A1-201ENST00000399126 ZEB1P37275 1124 aaPredicted RBP22.76■■□□□ 1.23
COL25A1-201ENST00000399126 EHBP1L1Q8N3D4 1523 aa22.75■■□□□ 1.23
COL25A1-201ENST00000399126 NCOA2Q15596 1464 aa22.74■■□□□ 1.23
COL25A1-201ENST00000399126 FAM50AQ14320 339 aaKnown RBP22.74■■□□□ 1.23
COL25A1-201ENST00000399126 PRG4Q92954 1404 aaPredicted RBP22.73■■□□□ 1.23
COL25A1-201ENST00000399126 SUPT6HQ7KZ85 1726 aaKnown RBP22.72■■□□□ 1.23
COL25A1-201ENST00000399126 FGD6Q6ZV73 1430 aa22.68■■□□□ 1.22
COL25A1-201ENST00000399126 ERCC6L2Q5T890 1561 aa22.66■■□□□ 1.22
COL25A1-201ENST00000399126 SHROOM2Q13796 1616 aa22.66■■□□□ 1.22
COL25A1-201ENST00000399126 ARHGEF11O15085 1522 aa22.65■■□□□ 1.22
COL25A1-201ENST00000399126 ERICH6Q7L0X2 663 aa22.65■■□□□ 1.22
COL25A1-201ENST00000399126 MYOM3Q5VTT5 1437 aa22.63■■□□□ 1.21
COL25A1-201ENST00000399126 ABCA8O94911 1581 aa22.62■■□□□ 1.21
COL25A1-201ENST00000399126 CLASP1Q7Z460 1538 aa22.6■■□□□ 1.21
COL25A1-201ENST00000399126 PTPRGP23470 1445 aa22.59■■□□□ 1.21
COL25A1-201ENST00000399126 PTPN23Q9H3S7 1636 aa22.55■■□□□ 1.2
COL25A1-201ENST00000399126 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.54■■□□□ 1.2
COL25A1-201ENST00000399126 PTPRKQ15262 1439 aa22.53■■□□□ 1.2
COL25A1-201ENST00000399126 RAB3GAP2Q9H2M9 1393 aa22.52■■□□□ 1.2
COL25A1-201ENST00000399126 ATP10BO94823 1461 aa22.52■■□□□ 1.2
COL25A1-201ENST00000399126 DHX57Q6P158 1386 aaKnown RBP22.51■■□□□ 1.19
COL25A1-201ENST00000399126 CDK11AQ9UQ88 783 aaPredicted RBP22.51■■□□□ 1.19
COL25A1-201ENST00000399126 KIF14Q15058 1648 aa22.51■■□□□ 1.19
COL25A1-201ENST00000399126 TROQ12816 1431 aaPredicted RBP22.5■■□□□ 1.19
COL25A1-201ENST00000399126 SETD5Q9C0A6 1442 aa22.47■■□□□ 1.19
COL25A1-201ENST00000399126 TCOF1Q13428 1488 aaKnown RBP22.45■■□□□ 1.18
COL25A1-201ENST00000399126 UACAQ9BZF9 1416 aa22.45■■□□□ 1.18
COL25A1-201ENST00000399126 MIA2Q96PC5 1412 aa22.42■■□□□ 1.18
COL25A1-201ENST00000399126 ZNF644Q9H582 1327 aaPredicted RBP22.42■■□□□ 1.18
COL25A1-201ENST00000399126 ADCY10Q96PN6 1610 aa22.42■■□□□ 1.18
COL25A1-201ENST00000399126 PLEKHD1A6NEE1 506 aa22.41■■□□□ 1.18
COL25A1-201ENST00000399126 CHIC2Q9UKJ5 165 aa22.38■■□□□ 1.17
COL25A1-201ENST00000399126 ABCC2Q92887 1545 aa22.37■■□□□ 1.17
COL25A1-201ENST00000399126 GPATCH8Q9UKJ3 1502 aaKnown RBP22.37■■□□□ 1.17
COL25A1-201ENST00000399126 HFM1A2PYH4 1435 aa22.33■■□□□ 1.17
COL25A1-201ENST00000399126 ABCC10Q5T3U5 1492 aa22.33■■□□□ 1.16
COL25A1-201ENST00000399126 CDC42BPAQ5VT25 1732 aa22.33■■□□□ 1.16
COL25A1-201ENST00000399126 ITSN2Q9NZM3 1697 aa22.32■■□□□ 1.16
COL25A1-201ENST00000399126 NAIPQ13075 1403 aa22.32■■□□□ 1.16
COL25A1-201ENST00000399126 RRP7BPQ9NSQ0 103 aa22.32■■□□□ 1.16
COL25A1-201ENST00000399126 CFDP1Q9UEE9 299 aaPredicted RBP22.32■■□□□ 1.16
COL25A1-201ENST00000399126 ZNF777Q9ULD5 760 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms