RNA–Protein interactions for RNA: ENST00000394440.7

CCT4-201, Transcript of chaperonin containing TCP1 subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCT4, Length 2,520 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT4-201ENST00000394440 GRIN2BQ13224 1484 aa23.35■■□□□ 1.33
CCT4-201ENST00000394440 EIF4G3O43432 1585 aaKnown RBP23.33■■□□□ 1.33
CCT4-201ENST00000394440 FHAD1B1AJZ9 1412 aa23.3■■□□□ 1.32
CCT4-201ENST00000394440 EFCAB5A4FU69 1503 aa23.27■■□□□ 1.32
CCT4-201ENST00000394440 SAMD9Q5K651 1589 aa23.19■■□□□ 1.3
CCT4-201ENST00000394440 SNAPC4Q5SXM2 1469 aa23.19■■□□□ 1.3
CCT4-201ENST00000394440 MAGI1Q96QZ7 1491 aaPredicted RBP23.15■■□□□ 1.3
CCT4-201ENST00000394440 APLP2Q06481 763 aa23.13■■□□□ 1.29
CCT4-201ENST00000394440 TTBK1Q5TCY1 1321 aaPredicted RBP23.12■■□□□ 1.29
CCT4-201ENST00000394440 FHOD3Q2V2M9 1422 aa23.11■■□□□ 1.29
CCT4-201ENST00000394440 IQGAP2Q13576 1575 aa23.11■■□□□ 1.29
CCT4-201ENST00000394440 PCF11O94913 1555 aaKnown RBP23.1■■□□□ 1.29
CCT4-201ENST00000394440 MAP3K1Q13233 1512 aa23.09■■□□□ 1.29
CCT4-201ENST00000394440 GRIN2AQ12879 1464 aa23.09■■□□□ 1.29
CCT4-201ENST00000394440 HRCP23327 699 aa23.09■■□□□ 1.29
CCT4-201ENST00000394440 SYNJ2O15056 1496 aa23.06■■□□□ 1.28
CCT4-201ENST00000394440 TIAM1Q13009 1591 aa23.05■■□□□ 1.28
CCT4-201ENST00000394440 CFAP43Q8NDM7 1665 aa23.04■■□□□ 1.28
CCT4-201ENST00000394440 FYCO1Q9BQS8 1478 aa23.03■■□□□ 1.28
CCT4-201ENST00000394440 P3H3Q8IVL6 736 aa23.02■■□□□ 1.28
CCT4-201ENST00000394440 FMN1Q68DA7 1419 aa23.01■■□□□ 1.27
CCT4-201ENST00000394440 KIAA0586Q9BVV6 1533 aa23.01■■□□□ 1.27
CCT4-201ENST00000394440 UGGT2Q9NYU1 1516 aa23.01■■□□□ 1.27
CCT4-201ENST00000394440 CASKIN1Q8WXD9 1431 aa23.01■■□□□ 1.27
CCT4-201ENST00000394440 KANK4Q5T7N3 995 aaPredicted RBP23■■□□□ 1.27
CCT4-201ENST00000394440 CEP170Q5SW79 1584 aa22.97■■□□□ 1.27
CCT4-201ENST00000394440 NUP160Q12769 1436 aa22.93■■□□□ 1.26
CCT4-201ENST00000394440 LRRIQ1Q96JM4 1722 aa22.92■■□□□ 1.26
CCT4-201ENST00000394440 LRRC9Q6ZRR7 1453 aa22.92■■□□□ 1.26
CCT4-201ENST00000394440 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.26
CCT4-201ENST00000394440 KIAA0556O60303 1618 aa22.89■■□□□ 1.26
CCT4-201ENST00000394440 DISP1Q96F81 1524 aa22.88■■□□□ 1.25
CCT4-201ENST00000394440 RRBP1Q9P2E9 1410 aaKnown RBP22.85■■□□□ 1.25
CCT4-201ENST00000394440 CHD1O14646 1710 aa22.82■■□□□ 1.24
CCT4-201ENST00000394440 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
CCT4-201ENST00000394440 HECW1Q76N89 1606 aa22.8■■□□□ 1.24
CCT4-201ENST00000394440 FBLN2P98095 1184 aa22.78■■□□□ 1.24
CCT4-201ENST00000394440 ATP1B4Q9UN42 357 aaPredicted RBP22.75■■□□□ 1.23
CCT4-201ENST00000394440 CCDC18Q5T9S5 1454 aa22.75■■□□□ 1.23
CCT4-201ENST00000394440 CCNB3Q8WWL7 1395 aa22.71■■□□□ 1.23
CCT4-201ENST00000394440 PHLDB1Q86UU1 1377 aa22.71■■□□□ 1.23
CCT4-201ENST00000394440 EPRSP07814 1512 aaKnown RBP22.69■■□□□ 1.22
CCT4-201ENST00000394440 EHBP1L1Q8N3D4 1523 aa22.69■■□□□ 1.22
CCT4-201ENST00000394440 RAPGEF6Q8TEU7 1601 aa22.68■■□□□ 1.22
CCT4-201ENST00000394440 ZEB1P37275 1124 aaPredicted RBP22.68■■□□□ 1.22
CCT4-201ENST00000394440 JPH4Q96JJ6 628 aa22.67■■□□□ 1.22
CCT4-201ENST00000394440 HNRNPUL2Q1KMD3 747 aaKnown RBP22.67■■□□□ 1.22
CCT4-201ENST00000394440 MAGI3Q5TCQ9 1506 aa22.67■■□□□ 1.22
CCT4-201ENST00000394440 CARMIL2Q6F5E8 1435 aa22.66■■□□□ 1.22
CCT4-201ENST00000394440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.65■■□□□ 1.22
CCT4-201ENST00000394440 SUPT6HQ7KZ85 1726 aaKnown RBP22.64■■□□□ 1.22
CCT4-201ENST00000394440 MTUS2Q5JR59 1369 aa22.64■■□□□ 1.22
CCT4-201ENST00000394440 SHROOM2Q13796 1616 aa22.63■■□□□ 1.21
CCT4-201ENST00000394440 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
CCT4-201ENST00000394440 NUP153P49790 1475 aaKnown RBP22.62■■□□□ 1.21
CCT4-201ENST00000394440 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
CCT4-201ENST00000394440 RIMBP3CA6NJZ7 1639 aa22.59■■□□□ 1.21
CCT4-201ENST00000394440 RIMBP3BA6NNM3 1639 aa22.59■■□□□ 1.21
CCT4-201ENST00000394440 RIMBP3Q9UFD9 1639 aa22.59■■□□□ 1.21
CCT4-201ENST00000394440 NCOA2Q15596 1464 aa22.59■■□□□ 1.21
CCT4-201ENST00000394440 CCER1Q8TC90 406 aaPredicted RBP22.56■■□□□ 1.2
CCT4-201ENST00000394440 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.55■■□□□ 1.2
CCT4-201ENST00000394440 PLB1Q6P1J6 1458 aa22.55■■□□□ 1.2
CCT4-201ENST00000394440 ABCA8O94911 1581 aa22.54■■□□□ 1.2
CCT4-201ENST00000394440 PRG4Q92954 1404 aaPredicted RBP22.54■■□□□ 1.2
CCT4-201ENST00000394440 FGD6Q6ZV73 1430 aa22.54■■□□□ 1.2
CCT4-201ENST00000394440 CLASP1Q7Z460 1538 aa22.54■■□□□ 1.2
CCT4-201ENST00000394440 MYOM3Q5VTT5 1437 aa22.51■■□□□ 1.19
CCT4-201ENST00000394440 PTPN23Q9H3S7 1636 aa22.43■■□□□ 1.18
CCT4-201ENST00000394440 ERCC6L2Q5T890 1561 aa22.42■■□□□ 1.18
CCT4-201ENST00000394440 ARID3CA6NKF2 412 aa22.42■■□□□ 1.18
CCT4-201ENST00000394440 ADCY10Q96PN6 1610 aa22.42■■□□□ 1.18
CCT4-201ENST00000394440 FAM50AQ14320 339 aaKnown RBP22.41■■□□□ 1.18
CCT4-201ENST00000394440 PTPRGP23470 1445 aa22.41■■□□□ 1.18
CCT4-201ENST00000394440 TCOF1Q13428 1488 aaKnown RBP22.4■■□□□ 1.18
CCT4-201ENST00000394440 TROQ12816 1431 aaPredicted RBP22.39■■□□□ 1.17
CCT4-201ENST00000394440 ITGAEP38570 1179 aa22.38■■□□□ 1.17
CCT4-201ENST00000394440 CDK11AQ9UQ88 783 aaPredicted RBP22.37■■□□□ 1.17
CCT4-201ENST00000394440 MIA2Q96PC5 1412 aa22.37■■□□□ 1.17
CCT4-201ENST00000394440 ATP10BO94823 1461 aa22.36■■□□□ 1.17
CCT4-201ENST00000394440 DHX57Q6P158 1386 aaKnown RBP22.34■■□□□ 1.17
CCT4-201ENST00000394440 KIF14Q15058 1648 aa22.33■■□□□ 1.17
CCT4-201ENST00000394440 SETD5Q9C0A6 1442 aa22.32■■□□□ 1.16
CCT4-201ENST00000394440 RAB3GAP2Q9H2M9 1393 aa22.32■■□□□ 1.16
CCT4-201ENST00000394440 UACAQ9BZF9 1416 aa22.31■■□□□ 1.16
CCT4-201ENST00000394440 PTPRKQ15262 1439 aa22.31■■□□□ 1.16
CCT4-201ENST00000394440 ITSN2Q9NZM3 1697 aa22.3■■□□□ 1.16
CCT4-201ENST00000394440 ABCC2Q92887 1545 aa22.28■■□□□ 1.16
CCT4-201ENST00000394440 CLSPNQ9HAW4 1339 aa22.27■■□□□ 1.16
CCT4-201ENST00000394440 CYB5RLQ6IPT4 315 aa22.26■■□□□ 1.15
CCT4-201ENST00000394440 HFM1A2PYH4 1435 aa22.23■■□□□ 1.15
CCT4-201ENST00000394440 ABCC10Q5T3U5 1492 aa22.23■■□□□ 1.15
CCT4-201ENST00000394440 CDC42BPAQ5VT25 1732 aa22.23■■□□□ 1.15
CCT4-201ENST00000394440 GPATCH8Q9UKJ3 1502 aaKnown RBP22.22■■□□□ 1.15
CCT4-201ENST00000394440 UHRF1BP1LA0JNW5 1464 aa22.21■■□□□ 1.15
CCT4-201ENST00000394440 PLEKHD1A6NEE1 506 aa22.2■■□□□ 1.14
CCT4-201ENST00000394440 DNMT1P26358 1616 aaKnown RBP22.2■■□□□ 1.14
CCT4-201ENST00000394440 GCC2Q8IWJ2 1684 aa22.19■■□□□ 1.14
CCT4-201ENST00000394440 AKNAQ7Z591 1439 aa22.18■■□□□ 1.14
CCT4-201ENST00000394440 NAIPQ13075 1403 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms