RNA–Protein interactions for RNA: ENST00000394440.7

CCT4-201, Transcript of chaperonin containing TCP1 subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCT4, Length 2,520 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT4-201ENST00000394440 NISCHQ9Y2I1 1504 aa33.73■■■□□ 2.99
CCT4-201ENST00000394440 CCDC180Q9P1Z9 1646 aa29.39■■■□□ 2.3
CCT4-201ENST00000394440 ZCCHC6Q5VYS8 1495 aaKnown RBP28.4■■■□□ 2.14
CCT4-201ENST00000394440 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
CCT4-201ENST00000394440 ABCC9O60706 1549 aa27.85■■■□□ 2.05
CCT4-201ENST00000394440 DCAF8L2P0C7V8 631 aa27.62■■■□□ 2.01
CCT4-201ENST00000394440 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
CCT4-201ENST00000394440 MYO15BQ96JP2 1530 aa27.53■■■□□ 2
CCT4-201ENST00000394440 NACADO15069 1562 aa27.28■■□□□ 1.96
CCT4-201ENST00000394440 SCRIBQ14160 1630 aa26.99■■□□□ 1.91
CCT4-201ENST00000394440 RB1CC1Q8TDY2 1594 aa26.99■■□□□ 1.91
CCT4-201ENST00000394440 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
CCT4-201ENST00000394440 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
CCT4-201ENST00000394440 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
CCT4-201ENST00000394440 RSF1Q96T23 1441 aaPredicted RBP26.22■■□□□ 1.79
CCT4-201ENST00000394440 CECR2Q9BXF3 1484 aa26.19■■□□□ 1.78
CCT4-201ENST00000394440 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.76
CCT4-201ENST00000394440 BAZ1AQ9NRL2 1556 aaPredicted RBP26.03■■□□□ 1.76
CCT4-201ENST00000394440 PABPN1Q86U42 306 aaKnown RBP eCLIP25.95■■□□□ 1.74
CCT4-201ENST00000394440 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
CCT4-201ENST00000394440 WIZO95785 1651 aa25.89■■□□□ 1.74
CCT4-201ENST00000394440 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
CCT4-201ENST00000394440 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
CCT4-201ENST00000394440 TOP2AP11388 1531 aaKnown RBP25.61■■□□□ 1.69
CCT4-201ENST00000394440 CHIC1Q5VXU3 224 aa25.57■■□□□ 1.68
CCT4-201ENST00000394440 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
CCT4-201ENST00000394440 SMARCA2P51531 1590 aa25.41■■□□□ 1.66
CCT4-201ENST00000394440 EIF4G1Q04637 1599 aaKnown RBP25.4■■□□□ 1.66
CCT4-201ENST00000394440 CCDC88BA6NC98 1476 aa25.32■■□□□ 1.64
CCT4-201ENST00000394440 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
CCT4-201ENST00000394440 CC2D2AQ9P2K1 1620 aa25.2■■□□□ 1.62
CCT4-201ENST00000394440 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
CCT4-201ENST00000394440 NCAPD3P42695 1498 aa25.17■■□□□ 1.62
CCT4-201ENST00000394440 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
CCT4-201ENST00000394440 ABCC8Q09428 1581 aa24.87■■□□□ 1.57
CCT4-201ENST00000394440 CFTRP13569 1480 aa24.66■■□□□ 1.54
CCT4-201ENST00000394440 WRNQ14191 1432 aaPredicted RBP eCLIP24.65■■□□□ 1.54
CCT4-201ENST00000394440 PRDM2Q13029 1718 aa24.64■■□□□ 1.54
CCT4-201ENST00000394440 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
CCT4-201ENST00000394440 LOC105371045A0A1W2PR82 267 aa24.56■■□□□ 1.52
CCT4-201ENST00000394440 CADPSQ9ULU8 1353 aa24.5■■□□□ 1.51
CCT4-201ENST00000394440 TOP2BQ02880 1626 aa24.49■■□□□ 1.51
CCT4-201ENST00000394440 BIVM-ERCC5R4GMW8 1640 aa24.49■■□□□ 1.51
CCT4-201ENST00000394440 FAM9AQ8IZU1 332 aaPredicted RBP24.49■■□□□ 1.51
CCT4-201ENST00000394440 SOGA1O94964 1423 aa24.41■■□□□ 1.5
CCT4-201ENST00000394440 EEA1Q15075 1411 aa24.39■■□□□ 1.49
CCT4-201ENST00000394440 CUX1P39880 1505 aa24.37■■□□□ 1.49
CCT4-201ENST00000394440 RUSC2Q8N2Y8 1516 aa24.33■■□□□ 1.48
CCT4-201ENST00000394440 LAMC3Q9Y6N6 1575 aa24.3■■□□□ 1.48
CCT4-201ENST00000394440 NESP48681 1621 aa24.26■■□□□ 1.47
CCT4-201ENST00000394440 FANCD2Q9BXW9 1451 aa24.25■■□□□ 1.47
CCT4-201ENST00000394440 CSRNP3Q8WYN3 585 aa24.19■■□□□ 1.46
CCT4-201ENST00000394440 KIF21BO75037 1637 aa24.12■■□□□ 1.45
CCT4-201ENST00000394440 EHMT2Q96KQ7 1210 aa24.11■■□□□ 1.45
CCT4-201ENST00000394440 DNMBPQ6XZF7 1577 aa24.1■■□□□ 1.45
CCT4-201ENST00000394440 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
CCT4-201ENST00000394440 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
CCT4-201ENST00000394440 GOLGA3Q08378 1498 aa24.06■■□□□ 1.44
CCT4-201ENST00000394440 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
CCT4-201ENST00000394440 PDS5BQ9NTI5 1447 aa24.04■■□□□ 1.44
CCT4-201ENST00000394440 KIF21AQ7Z4S6 1674 aa24.03■■□□□ 1.44
CCT4-201ENST00000394440 TOPBP1Q92547 1522 aa24.03■■□□□ 1.44
CCT4-201ENST00000394440 TNIKQ9UKE5 1360 aa24.02■■□□□ 1.44
CCT4-201ENST00000394440 KIF27Q86VH2 1401 aa24■■□□□ 1.43
CCT4-201ENST00000394440 URB2Q14146 1524 aaKnown RBP23.97■■□□□ 1.43
CCT4-201ENST00000394440 CUX2O14529 1486 aa23.95■■□□□ 1.42
CCT4-201ENST00000394440 PRXQ9BXM0 1461 aa23.93■■□□□ 1.42
CCT4-201ENST00000394440 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
CCT4-201ENST00000394440 ERICH3Q5RHP9 1530 aa23.92■■□□□ 1.42
CCT4-201ENST00000394440 RAPGEF2Q9Y4G8 1499 aa23.91■■□□□ 1.42
CCT4-201ENST00000394440 CEP162Q5TB80 1403 aa23.9■■□□□ 1.42
CCT4-201ENST00000394440 ABCA10Q8WWZ4 1543 aa23.86■■□□□ 1.41
CCT4-201ENST00000394440 WDR97A6NE52 1622 aa23.85■■□□□ 1.41
CCT4-201ENST00000394440 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
CCT4-201ENST00000394440 RAD54L2Q9Y4B4 1467 aa23.82■■□□□ 1.4
CCT4-201ENST00000394440 IGF1RP08069 1367 aa23.77■■□□□ 1.4
CCT4-201ENST00000394440 THOC2Q8NI27 1593 aaKnown RBP23.76■■□□□ 1.39
CCT4-201ENST00000394440 MRC2Q9UBG0 1479 aa23.75■■□□□ 1.39
CCT4-201ENST00000394440 TARBP1Q13395 1621 aaKnown RBP23.7■■□□□ 1.38
CCT4-201ENST00000394440 ABCA5Q8WWZ7 1642 aa23.7■■□□□ 1.38
CCT4-201ENST00000394440 WDR62O43379 1518 aa23.67■■□□□ 1.38
CCT4-201ENST00000394440 CLIP1P30622 1438 aa23.67■■□□□ 1.38
CCT4-201ENST00000394440 CARMIL1Q5VZK9 1371 aa23.64■■□□□ 1.38
CCT4-201ENST00000394440 CUL7Q14999 1698 aa23.64■■□□□ 1.37
CCT4-201ENST00000394440 DNAJC5Q9H3Z4 198 aa23.62■■□□□ 1.37
CCT4-201ENST00000394440 PCGF6Q9BYE7 350 aa23.58■■□□□ 1.37
CCT4-201ENST00000394440 TRIM26Q12899 539 aaPredicted RBP23.56■■□□□ 1.36
CCT4-201ENST00000394440 GAPVD1Q14C86 1478 aa23.56■■□□□ 1.36
CCT4-201ENST00000394440 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
CCT4-201ENST00000394440 VPS8Q8N3P4 1428 aa23.51■■□□□ 1.35
CCT4-201ENST00000394440 PBRM1Q86U86 1689 aa23.5■■□□□ 1.35
CCT4-201ENST00000394440 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
CCT4-201ENST00000394440 ARAP1Q96P48 1450 aa23.47■■□□□ 1.35
CCT4-201ENST00000394440 CTTNBP2Q8WZ74 1663 aa23.43■■□□□ 1.34
CCT4-201ENST00000394440 ARHGAP35Q9NRY4 1499 aa23.42■■□□□ 1.34
CCT4-201ENST00000394440 AQRO60306 1485 aaKnown RBP eCLIP23.38■■□□□ 1.332e-9■■■□□ 16.1
CCT4-201ENST00000394440 RANGAP1P46060 587 aaPredicted RBP23.38■■□□□ 1.33
CCT4-201ENST00000394440 ZNF608Q9ULD9 1512 aaPredicted RBP23.37■■□□□ 1.33
CCT4-201ENST00000394440 ADAMTS12P58397 1594 aa23.36■■□□□ 1.33
CCT4-201ENST00000394440 PPARGC1BQ86YN6 1023 aaKnown RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms