RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 OSCARQ8IYS5 282 aa33.34■■■□□ 2.93
TRIM54-202ENST00000380075 CUL7Q14999 1698 aa33.34■■■□□ 2.93
TRIM54-202ENST00000380075 RAPGEF2Q9Y4G8 1499 aa33.31■■■□□ 2.92
TRIM54-202ENST00000380075 GRIN2AQ12879 1464 aa33.3■■■□□ 2.92
TRIM54-202ENST00000380075 PPARGC1BQ86YN6 1023 aaKnown RBP33.26■■■□□ 2.91
TRIM54-202ENST00000380075 CLIP1P30622 1438 aa33.26■■■□□ 2.91
TRIM54-202ENST00000380075 PRXQ9BXM0 1461 aa33.25■■■□□ 2.91
TRIM54-202ENST00000380075 NUP160Q12769 1436 aa33.13■■■□□ 2.89
TRIM54-202ENST00000380075 VPS8Q8N3P4 1428 aa33.12■■■□□ 2.89
TRIM54-202ENST00000380075 CEP170Q5SW79 1584 aa33.12■■■□□ 2.89
TRIM54-202ENST00000380075 CLASP1Q7Z460 1538 aa33.03■■■□□ 2.88
TRIM54-202ENST00000380075 DNAJC5Q9H3Z4 198 aa33.02■■■□□ 2.88
TRIM54-202ENST00000380075 KIAA0586Q9BVV6 1533 aa32.95■■■□□ 2.86
TRIM54-202ENST00000380075 JPH4Q96JJ6 628 aa32.88■■■□□ 2.85
TRIM54-202ENST00000380075 APLP2Q06481 763 aa32.83■■■□□ 2.85
TRIM54-202ENST00000380075 TTBK1Q5TCY1 1321 aaPredicted RBP32.82■■■□□ 2.84
TRIM54-202ENST00000380075 IQGAP2Q13576 1575 aa32.8■■■□□ 2.84
TRIM54-202ENST00000380075 ARAP1Q96P48 1450 aa32.8■■■□□ 2.84
TRIM54-202ENST00000380075 SHROOM2Q13796 1616 aa32.77■■■□□ 2.84
TRIM54-202ENST00000380075 CTTNBP2Q8WZ74 1663 aa32.77■■■□□ 2.84
TRIM54-202ENST00000380075 PRG4Q92954 1404 aaPredicted RBP32.75■■■□□ 2.83
TRIM54-202ENST00000380075 ARHGEF11O15085 1522 aa32.74■■■□□ 2.83
TRIM54-202ENST00000380075 CCER1Q8TC90 406 aaPredicted RBP32.73■■■□□ 2.83
TRIM54-202ENST00000380075 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.7■■■□□ 2.83
TRIM54-202ENST00000380075 ERCC6L2Q5T890 1561 aa32.7■■■□□ 2.83
TRIM54-202ENST00000380075 RANGAP1P46060 587 aaPredicted RBP32.69■■■□□ 2.82
TRIM54-202ENST00000380075 RIMBP3CA6NJZ7 1639 aa32.67■■■□□ 2.82
TRIM54-202ENST00000380075 RIMBP3BA6NNM3 1639 aa32.67■■■□□ 2.82
TRIM54-202ENST00000380075 RIMBP3Q9UFD9 1639 aa32.67■■■□□ 2.82
TRIM54-202ENST00000380075 UGGT2Q9NYU1 1516 aa32.65■■■□□ 2.82
TRIM54-202ENST00000380075 ARHGAP35Q9NRY4 1499 aa32.62■■■□□ 2.81
TRIM54-202ENST00000380075 DISP1Q96F81 1524 aa32.59■■■□□ 2.81
TRIM54-202ENST00000380075 CARMIL2Q6F5E8 1435 aa32.57■■■□□ 2.8
TRIM54-202ENST00000380075 CYB5RLQ6IPT4 315 aa32.52■■■□□ 2.8
TRIM54-202ENST00000380075 P3H3Q8IVL6 736 aa32.52■■■□□ 2.8
TRIM54-202ENST00000380075 KIAA0556O60303 1618 aa32.49■■■□□ 2.79
TRIM54-202ENST00000380075 SAMD9Q5K651 1589 aa32.43■■■□□ 2.78
TRIM54-202ENST00000380075 PTPRGP23470 1445 aa32.42■■■□□ 2.78
TRIM54-202ENST00000380075 MAP3K1Q13233 1512 aa32.4■■■□□ 2.78
TRIM54-202ENST00000380075 EFCAB5A4FU69 1503 aa32.36■■■□□ 2.77
TRIM54-202ENST00000380075 FHOD3Q2V2M9 1422 aa32.35■■■□□ 2.77
TRIM54-202ENST00000380075 HNRNPUL2Q1KMD3 747 aaKnown RBP32.32■■■□□ 2.77
TRIM54-202ENST00000380075 KANK4Q5T7N3 995 aaPredicted RBP32.3■■■□□ 2.76
TRIM54-202ENST00000380075 RRBP1Q9P2E9 1410 aaKnown RBP32.29■■■□□ 2.76
TRIM54-202ENST00000380075 TIAM1Q13009 1591 aa32.24■■■□□ 2.75
TRIM54-202ENST00000380075 PLB1Q6P1J6 1458 aa32.2■■■□□ 2.75
TRIM54-202ENST00000380075 UACAQ9BZF9 1416 aa32.2■■■□□ 2.74
TRIM54-202ENST00000380075 ADCY10Q96PN6 1610 aa32.13■■■□□ 2.73
TRIM54-202ENST00000380075 CCNB3Q8WWL7 1395 aa32.11■■■□□ 2.73
TRIM54-202ENST00000380075 FMN1Q68DA7 1419 aa32.11■■■□□ 2.73
TRIM54-202ENST00000380075 ABCA8O94911 1581 aa32.11■■■□□ 2.73
TRIM54-202ENST00000380075 CFAP43Q8NDM7 1665 aa32.11■■■□□ 2.73
TRIM54-202ENST00000380075 ABCC2Q92887 1545 aa32.09■■■□□ 2.73
TRIM54-202ENST00000380075 UHRF1BP1LA0JNW5 1464 aa32.09■■■□□ 2.73
TRIM54-202ENST00000380075 PCF11O94913 1555 aaKnown RBP32.09■■■□□ 2.73
TRIM54-202ENST00000380075 LRRC9Q6ZRR7 1453 aa32.09■■■□□ 2.73
TRIM54-202ENST00000380075 FYCO1Q9BQS8 1478 aa32.09■■■□□ 2.73
TRIM54-202ENST00000380075 CLSPNQ9HAW4 1339 aa32.05■■■□□ 2.72
TRIM54-202ENST00000380075 CASKIN1Q8WXD9 1431 aa32.04■■■□□ 2.72
TRIM54-202ENST00000380075 ARID3CA6NKF2 412 aa32.03■■■□□ 2.72
TRIM54-202ENST00000380075 RAPGEF6Q8TEU7 1601 aa32.02■■■□□ 2.72
TRIM54-202ENST00000380075 NPM1P06748 294 aaKnown RBP eCLIP32.02■■■□□ 2.72
TRIM54-202ENST00000380075 ATP1B4Q9UN42 357 aaPredicted RBP32.01■■■□□ 2.71
TRIM54-202ENST00000380075 NUP153P49790 1475 aaKnown RBP31.97■■■□□ 2.71
TRIM54-202ENST00000380075 KDM5BQ9UGL1 1544 aa31.95■■■□□ 2.71
TRIM54-202ENST00000380075 ATP10BO94823 1461 aa31.91■■■□□ 2.7
TRIM54-202ENST00000380075 DHX57Q6P158 1386 aaKnown RBP31.88■■■□□ 2.69
TRIM54-202ENST00000380075 ZCCHC11Q5TAX3 1644 aaKnown RBP31.87■■■□□ 2.69
TRIM54-202ENST00000380075 HECW1Q76N89 1606 aa31.86■■■□□ 2.69
TRIM54-202ENST00000380075 PHLDB1Q86UU1 1377 aa31.83■■■□□ 2.69
TRIM54-202ENST00000380075 EPRSP07814 1512 aaKnown RBP31.82■■■□□ 2.68
TRIM54-202ENST00000380075 CDK13Q14004 1512 aaKnown RBP31.81■■■□□ 2.68
TRIM54-202ENST00000380075 ZNF316A6NFI3 1004 aaPredicted RBP31.8■■■□□ 2.68
TRIM54-202ENST00000380075 ASXL2Q76L83 1435 aa31.8■■■□□ 2.68
TRIM54-202ENST00000380075 MAPKBP1O60336 1514 aa31.8■■■□□ 2.68
TRIM54-202ENST00000380075 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.77■■■□□ 2.68
TRIM54-202ENST00000380075 DIEXFQ68CQ4 756 aaKnown RBP31.77■■■□□ 2.68
TRIM54-202ENST00000380075 LRRIQ1Q96JM4 1722 aa31.73■■■□□ 2.67
TRIM54-202ENST00000380075 PLEKHD1A6NEE1 506 aa31.7■■■□□ 2.66
TRIM54-202ENST00000380075 CCDC18Q5T9S5 1454 aa31.7■■■□□ 2.66
TRIM54-202ENST00000380075 WDR7Q9Y4E6 1490 aa31.69■■■□□ 2.66
TRIM54-202ENST00000380075 TRHP20396 242 aaPredicted RBP31.68■■■□□ 2.66
TRIM54-202ENST00000380075 KCNH8Q96L42 1107 aa31.68■■■□□ 2.66
TRIM54-202ENST00000380075 CDK11AQ9UQ88 783 aaPredicted RBP31.65■■■□□ 2.66
TRIM54-202ENST00000380075 SETD5Q9C0A6 1442 aa31.64■■■□□ 2.65
TRIM54-202ENST00000380075 RAB3GAP2Q9H2M9 1393 aa31.63■■■□□ 2.65
TRIM54-202ENST00000380075 ABCC10Q5T3U5 1492 aa31.63■■■□□ 2.65
TRIM54-202ENST00000380075 FAM69CQ0P6D2 419 aa31.63■■■□□ 2.65
TRIM54-202ENST00000380075 MTUS2Q5JR59 1369 aa31.63■■■□□ 2.65
TRIM54-202ENST00000380075 ITGAEP38570 1179 aa31.62■■■□□ 2.65
TRIM54-202ENST00000380075 EHBP1L1Q8N3D4 1523 aa31.59■■■□□ 2.65
TRIM54-202ENST00000380075 FAM50AQ14320 339 aaKnown RBP31.58■■■□□ 2.65
TRIM54-202ENST00000380075 FGD6Q6ZV73 1430 aa31.57■■■□□ 2.64
TRIM54-202ENST00000380075 DIP2BQ9P265 1576 aa31.57■■■□□ 2.64
TRIM54-202ENST00000380075 MAGI3Q5TCQ9 1506 aa31.56■■■□□ 2.64
TRIM54-202ENST00000380075 TROQ12816 1431 aaPredicted RBP31.54■■■□□ 2.64
TRIM54-202ENST00000380075 SUPT6HQ7KZ85 1726 aaKnown RBP31.52■■■□□ 2.64
TRIM54-202ENST00000380075 NCOA2Q15596 1464 aa31.48■■■□□ 2.63
TRIM54-202ENST00000380075 KIF13AQ9H1H9 1805 aa31.48■■■□□ 2.63
TRIM54-202ENST00000380075 GLI2P10070 1586 aa31.47■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms