RNA–Protein interactions for RNA: ENST00000312438.7

CLCF1-201, Transcript of cardiotrophin like cytokine factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCF1, Length 1,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1-201ENST00000312438 ADAMTS12P58397 1594 aa25.87■■□□□ 1.73
CLCF1-201ENST00000312438 EIF4G3O43432 1585 aaKnown RBP25.85■■□□□ 1.73
CLCF1-201ENST00000312438 SNAPC4Q5SXM2 1469 aa25.82■■□□□ 1.72
CLCF1-201ENST00000312438 CTTNBP2Q8WZ74 1663 aa25.81■■□□□ 1.72
CLCF1-201ENST00000312438 TTBK1Q5TCY1 1321 aaPredicted RBP25.81■■□□□ 1.72
CLCF1-201ENST00000312438 EFCAB5A4FU69 1503 aa25.8■■□□□ 1.72
CLCF1-201ENST00000312438 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
CLCF1-201ENST00000312438 P3H3Q8IVL6 736 aa25.79■■□□□ 1.72
CLCF1-201ENST00000312438 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
CLCF1-201ENST00000312438 FHOD3Q2V2M9 1422 aa25.7■■□□□ 1.71
CLCF1-201ENST00000312438 GRIN2AQ12879 1464 aa25.7■■□□□ 1.71
CLCF1-201ENST00000312438 SYNJ2O15056 1496 aa25.7■■□□□ 1.7
CLCF1-201ENST00000312438 FMN1Q68DA7 1419 aa25.65■■□□□ 1.7
CLCF1-201ENST00000312438 KIAA0586Q9BVV6 1533 aa25.65■■□□□ 1.7
CLCF1-201ENST00000312438 KANK4Q5T7N3 995 aaPredicted RBP25.65■■□□□ 1.7
CLCF1-201ENST00000312438 IQGAP2Q13576 1575 aa25.64■■□□□ 1.7
CLCF1-201ENST00000312438 FBLN2P98095 1184 aa25.64■■□□□ 1.7
CLCF1-201ENST00000312438 SAMD9Q5K651 1589 aa25.64■■□□□ 1.69
CLCF1-201ENST00000312438 MAP3K1Q13233 1512 aa25.62■■□□□ 1.69
CLCF1-201ENST00000312438 CASKIN1Q8WXD9 1431 aa25.59■■□□□ 1.69
CLCF1-201ENST00000312438 HRCP23327 699 aa25.58■■□□□ 1.69
CLCF1-201ENST00000312438 ATP1B4Q9UN42 357 aaPredicted RBP25.56■■□□□ 1.68
CLCF1-201ENST00000312438 UGGT2Q9NYU1 1516 aa25.56■■□□□ 1.68
CLCF1-201ENST00000312438 FYCO1Q9BQS8 1478 aa25.55■■□□□ 1.68
CLCF1-201ENST00000312438 NUP160Q12769 1436 aa25.52■■□□□ 1.68
CLCF1-201ENST00000312438 PCF11O94913 1555 aaKnown RBP25.51■■□□□ 1.67
CLCF1-201ENST00000312438 TIAM1Q13009 1591 aa25.51■■□□□ 1.67
CLCF1-201ENST00000312438 CEP170Q5SW79 1584 aa25.47■■□□□ 1.67
CLCF1-201ENST00000312438 LRRC9Q6ZRR7 1453 aa25.45■■□□□ 1.67
CLCF1-201ENST00000312438 JPH4Q96JJ6 628 aa25.44■■□□□ 1.66
CLCF1-201ENST00000312438 DISP1Q96F81 1524 aa25.42■■□□□ 1.66
CLCF1-201ENST00000312438 KIAA0556O60303 1618 aa25.36■■□□□ 1.65
CLCF1-201ENST00000312438 CFAP43Q8NDM7 1665 aa25.36■■□□□ 1.65
CLCF1-201ENST00000312438 CARMIL2Q6F5E8 1435 aa25.35■■□□□ 1.65
CLCF1-201ENST00000312438 RRBP1Q9P2E9 1410 aaKnown RBP25.35■■□□□ 1.65
CLCF1-201ENST00000312438 HNRNPUL2Q1KMD3 747 aaKnown RBP25.32■■□□□ 1.64
CLCF1-201ENST00000312438 ZEB1P37275 1124 aaPredicted RBP25.29■■□□□ 1.64
CLCF1-201ENST00000312438 CCDC18Q5T9S5 1454 aa25.29■■□□□ 1.64
CLCF1-201ENST00000312438 CCNB3Q8WWL7 1395 aa25.28■■□□□ 1.64
CLCF1-201ENST00000312438 MTUS2Q5JR59 1369 aa25.28■■□□□ 1.64
CLCF1-201ENST00000312438 HECW1Q76N89 1606 aa25.26■■□□□ 1.63
CLCF1-201ENST00000312438 PHLDB1Q86UU1 1377 aa25.24■■□□□ 1.63
CLCF1-201ENST00000312438 EPRSP07814 1512 aaKnown RBP25.23■■□□□ 1.63
CLCF1-201ENST00000312438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.22■■□□□ 1.63
CLCF1-201ENST00000312438 CHD1O14646 1710 aa25.21■■□□□ 1.63
CLCF1-201ENST00000312438 PRG4Q92954 1404 aaPredicted RBP25.19■■□□□ 1.62
CLCF1-201ENST00000312438 CCER1Q8TC90 406 aaPredicted RBP25.19■■□□□ 1.62
CLCF1-201ENST00000312438 LRRIQ1Q96JM4 1722 aa25.17■■□□□ 1.62
CLCF1-201ENST00000312438 EHBP1L1Q8N3D4 1523 aa25.14■■□□□ 1.62
CLCF1-201ENST00000312438 NUP153P49790 1475 aaKnown RBP25.13■■□□□ 1.61
CLCF1-201ENST00000312438 RAPGEF6Q8TEU7 1601 aa25.13■■□□□ 1.61
CLCF1-201ENST00000312438 CDK11AQ9UQ88 783 aaPredicted RBP25.13■■□□□ 1.61
CLCF1-201ENST00000312438 ARID3CA6NKF2 412 aa25.12■■□□□ 1.61
CLCF1-201ENST00000312438 PLB1Q6P1J6 1458 aa25.11■■□□□ 1.61
CLCF1-201ENST00000312438 CDK13Q14004 1512 aaKnown RBP25.1■■□□□ 1.61
CLCF1-201ENST00000312438 NCOA2Q15596 1464 aa25.1■■□□□ 1.61
CLCF1-201ENST00000312438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.1■■□□□ 1.614e-7■■■■■ 49.5
CLCF1-201ENST00000312438 PTPRGP23470 1445 aa25.09■■□□□ 1.61
CLCF1-201ENST00000312438 FAM50AQ14320 339 aaKnown RBP25.09■■□□□ 1.61
CLCF1-201ENST00000312438 MAGI3Q5TCQ9 1506 aa25.08■■□□□ 1.61
CLCF1-201ENST00000312438 SHROOM2Q13796 1616 aa25.06■■□□□ 1.6
CLCF1-201ENST00000312438 ITGAEP38570 1179 aa25.05■■□□□ 1.6
CLCF1-201ENST00000312438 SUPT6HQ7KZ85 1726 aaKnown RBP25.04■■□□□ 1.6
CLCF1-201ENST00000312438 FGD6Q6ZV73 1430 aa25.04■■□□□ 1.6
CLCF1-201ENST00000312438 ARHGEF11O15085 1522 aa25.03■■□□□ 1.6
CLCF1-201ENST00000312438 MYOM3Q5VTT5 1437 aa25.03■■□□□ 1.6
CLCF1-201ENST00000312438 CLASP1Q7Z460 1538 aa25.02■■□□□ 1.6
CLCF1-201ENST00000312438 ABCA8O94911 1581 aa25.01■■□□□ 1.59
CLCF1-201ENST00000312438 PLEKHD1A6NEE1 506 aa24.94■■□□□ 1.58
CLCF1-201ENST00000312438 TROQ12816 1431 aaPredicted RBP24.94■■□□□ 1.58
CLCF1-201ENST00000312438 ATP10BO94823 1461 aa24.93■■□□□ 1.58
CLCF1-201ENST00000312438 UACAQ9BZF9 1416 aa24.93■■□□□ 1.58
CLCF1-201ENST00000312438 MIA2Q96PC5 1412 aa24.92■■□□□ 1.58
CLCF1-201ENST00000312438 OSCARQ8IYS5 282 aa24.89■■□□□ 1.58
CLCF1-201ENST00000312438 ERCC6L2Q5T890 1561 aa24.88■■□□□ 1.57
CLCF1-201ENST00000312438 SETD5Q9C0A6 1442 aa24.85■■□□□ 1.57
CLCF1-201ENST00000312438 TCOF1Q13428 1488 aaKnown RBP24.85■■□□□ 1.57
CLCF1-201ENST00000312438 PTPN23Q9H3S7 1636 aa24.83■■□□□ 1.56
CLCF1-201ENST00000312438 RAB3GAP2Q9H2M9 1393 aa24.82■■□□□ 1.56
CLCF1-201ENST00000312438 CLSPNQ9HAW4 1339 aa24.79■■□□□ 1.56
CLCF1-201ENST00000312438 DHX57Q6P158 1386 aaKnown RBP24.79■■□□□ 1.56
CLCF1-201ENST00000312438 ABCC2Q92887 1545 aa24.78■■□□□ 1.56
CLCF1-201ENST00000312438 PTPRKQ15262 1439 aa24.77■■□□□ 1.56
CLCF1-201ENST00000312438 CFDP1Q9UEE9 299 aaPredicted RBP24.75■■□□□ 1.55
CLCF1-201ENST00000312438 ADCY10Q96PN6 1610 aa24.75■■□□□ 1.55
CLCF1-201ENST00000312438 UHRF1BP1LA0JNW5 1464 aa24.75■■□□□ 1.55
CLCF1-201ENST00000312438 GPATCH8Q9UKJ3 1502 aaKnown RBP24.74■■□□□ 1.55
CLCF1-201ENST00000312438 HFM1A2PYH4 1435 aa24.7■■□□□ 1.54
CLCF1-201ENST00000312438 KIF14Q15058 1648 aa24.69■■□□□ 1.54
CLCF1-201ENST00000312438 ABCC10Q5T3U5 1492 aa24.69■■□□□ 1.54
CLCF1-201ENST00000312438 ZNF644Q9H582 1327 aaPredicted RBP24.68■■□□□ 1.54
CLCF1-201ENST00000312438 KDM5BQ9UGL1 1544 aa24.64■■□□□ 1.54
CLCF1-201ENST00000312438 CHIC2Q9UKJ5 165 aa24.64■■□□□ 1.54
CLCF1-201ENST00000312438 NAIPQ13075 1403 aa24.63■■□□□ 1.53
CLCF1-201ENST00000312438 ITSN2Q9NZM3 1697 aa24.63■■□□□ 1.53
CLCF1-201ENST00000312438 ZNF777Q9ULD5 760 aaPredicted RBP24.63■■□□□ 1.53
CLCF1-201ENST00000312438 DAPK1P53355 1430 aa24.62■■□□□ 1.53
CLCF1-201ENST00000312438 ABCC5O15440 1437 aa24.61■■□□□ 1.53
CLCF1-201ENST00000312438 AKNAQ7Z591 1439 aa24.61■■□□□ 1.53
CLCF1-201ENST00000312438 RRP7BPQ9NSQ0 103 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms